Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_785 and Pf1N1B4_786 are separated by 1 nucleotides Pf1N1B4_786 and Pf1N1B4_787 are separated by 23 nucleotides Pf1N1B4_787 and Pf1N1B4_788 are separated by 207 nucleotides
Pf1N1B4_785 - acetyltransferase, GNAT family, at 896,062 to 896,577
_785
Pf1N1B4_786 - L-lysine permease, at 896,579 to 897,217
_786
Pf1N1B4_787 - Nudix hydrolase family protein PA3470, at 897,241 to 897,675
_787
Pf1N1B4_788 - Response regulator, at 897,883 to 899,241
_788
Position (kb) 897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.416 kb on + strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.646 kb on + strand, within Pf1N1B4_786 at 896.647 kb on - strand, within Pf1N1B4_786 at 896.647 kb on - strand, within Pf1N1B4_786 at 896.970 kb on + strand at 897.063 kb on - strand, within Pf1N1B4_786 at 897.063 kb on - strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.164 kb on + strand at 897.281 kb on - strand at 897.281 kb on - strand at 897.409 kb on + strand at 897.410 kb on - strand, within Pf1N1B4_787 at 897.410 kb on - strand, within Pf1N1B4_787 at 897.746 kb on + strand at 897.747 kb on - strand at 897.765 kb on - strand at 897.798 kb on + strand at 897.812 kb on - strand at 897.822 kb on - strand at 897.823 kb on + strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.934 kb on + strand at 897.934 kb on + strand at 897.934 kb on + strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.942 kb on - strand at 897.942 kb on - strand at 897.942 kb on - strand at 898.130 kb on + strand, within Pf1N1B4_788 at 898.130 kb on + strand, within Pf1N1B4_788 at 898.130 kb on + strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.176 kb on - strand, within Pf1N1B4_788 at 898.191 kb on - strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand at 898.203 kb on - strand, within Pf1N1B4_788 at 898.203 kb on - strand, within Pf1N1B4_788 at 898.203 kb on - strand, within Pf1N1B4_788 at 898.520 kb on + strand, within Pf1N1B4_788 at 898.583 kb on + strand, within Pf1N1B4_788
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 896,316 - Pf1N1B4_785 0.49 -0.1 896,316 - Pf1N1B4_785 0.49 -0.1 896,316 - Pf1N1B4_785 0.49 -0.1 896,416 + Pf1N1B4_785 0.69 -1.7 896,417 - Pf1N1B4_785 0.69 -0.1 896,417 - Pf1N1B4_785 0.69 -1.9 896,417 - Pf1N1B4_785 0.69 -3.1 896,646 + Pf1N1B4_786 0.10 -3.4 896,647 - Pf1N1B4_786 0.11 -3.5 896,647 - Pf1N1B4_786 0.11 -0.1 896,970 + -0.1 897,063 - Pf1N1B4_786 0.76 -0.1 897,063 - Pf1N1B4_786 0.76 -2.8 897,138 + Pf1N1B4_786 0.87 -0.1 897,138 + Pf1N1B4_786 0.87 -0.1 897,138 + Pf1N1B4_786 0.87 -0.1 897,139 - Pf1N1B4_786 0.88 -0.1 897,139 - Pf1N1B4_786 0.88 -2.8 897,139 - Pf1N1B4_786 0.88 -0.1 897,164 + -0.1 897,281 - -3.2 897,281 - -2.1 897,409 + -0.1 897,410 - Pf1N1B4_787 0.39 -3.3 897,410 - Pf1N1B4_787 0.39 -0.1 897,746 + -0.1 897,747 - -0.1 897,765 - -0.1 897,798 + -2.6 897,812 - -1.7 897,822 - -0.1 897,823 + -0.1 897,824 - -0.1 897,824 - -0.1 897,824 - -0.1 897,824 - -3.0 897,824 - -0.1 897,884 + -0.1 897,884 + -0.4 897,884 + -3.0 897,884 + -3.5 897,885 - -0.1 897,885 - -0.1 897,885 - -0.1 897,885 - -0.1 897,934 + -0.1 897,934 + -0.1 897,934 + -0.1 897,935 - -2.5 897,935 - -2.7 897,935 - -3.9 897,935 - -1.9 897,935 - -1.9 897,935 - -0.1 897,935 - -1.6 897,942 - -0.1 897,942 - -0.1 897,942 - -0.1 898,130 + Pf1N1B4_788 0.18 -0.1 898,130 + Pf1N1B4_788 0.18 -2.2 898,130 + Pf1N1B4_788 0.18 -0.1 898,131 - Pf1N1B4_788 0.18 -0.1 898,131 - Pf1N1B4_788 0.18 -0.1 898,131 - Pf1N1B4_788 0.18 -0.1 898,176 - Pf1N1B4_788 0.22 -2.9 898,191 - Pf1N1B4_788 0.23 -0.1 898,202 + Pf1N1B4_788 0.23 -0.1 898,202 + Pf1N1B4_788 0.23 -0.1 898,202 + Pf1N1B4_788 0.23 -0.1 898,202 + Pf1N1B4_788 0.23 -0.1 898,202 + Pf1N1B4_788 0.23 -0.1 898,202 + -0.1 898,203 - Pf1N1B4_788 0.24 -0.1 898,203 - Pf1N1B4_788 0.24 -0.1 898,203 - Pf1N1B4_788 0.24 -0.1 898,520 + Pf1N1B4_788 0.47 -0.1 898,583 + Pf1N1B4_788 0.52 -3.1
Or see this region's nucleotide sequence