Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_764

Experiment: Nitrate reduction, replicate C t1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_763 and Pf1N1B4_764 are separated by 115 nucleotidesPf1N1B4_764 and Pf1N1B4_765 are separated by 116 nucleotides Pf1N1B4_763 - Ferric iron ABC transporter, ATP-binding protein, at 867,093 to 868,202 _763 Pf1N1B4_764 - Uncharacterized isomerase yddE, PhzC-PhzF family, at 868,318 to 869,100 _764 Pf1N1B4_765 - Cys-tRNA(Pro) deacylase YbaK, at 869,217 to 869,687 _765 Position (kb) 868 869 870Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 867.628 kb on + strand, within Pf1N1B4_763at 867.628 kb on + strand, within Pf1N1B4_763at 867.629 kb on - strandat 867.629 kb on - strand, within Pf1N1B4_763at 867.629 kb on - strand, within Pf1N1B4_763at 867.757 kb on - strand, within Pf1N1B4_763at 867.765 kb on + strand, within Pf1N1B4_763at 867.814 kb on - strand, within Pf1N1B4_763at 867.832 kb on + strand, within Pf1N1B4_763at 867.833 kb on - strand, within Pf1N1B4_763at 867.872 kb on - strand, within Pf1N1B4_763at 867.872 kb on - strand, within Pf1N1B4_763at 867.888 kb on + strand, within Pf1N1B4_763at 867.888 kb on + strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 867.889 kb on - strand, within Pf1N1B4_763at 868.090 kb on + strand, within Pf1N1B4_763at 868.249 kb on - strandat 868.274 kb on + strandat 868.275 kb on - strandat 868.275 kb on - strandat 868.275 kb on - strandat 868.330 kb on + strandat 868.331 kb on - strandat 868.331 kb on - strandat 868.331 kb on - strandat 868.331 kb on - strandat 868.427 kb on + strand, within Pf1N1B4_764at 868.428 kb on - strand, within Pf1N1B4_764at 868.654 kb on + strand, within Pf1N1B4_764at 868.655 kb on - strand, within Pf1N1B4_764at 868.844 kb on + strand, within Pf1N1B4_764at 868.844 kb on + strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.845 kb on - strand, within Pf1N1B4_764at 868.862 kb on + strand, within Pf1N1B4_764at 868.863 kb on - strand, within Pf1N1B4_764at 868.863 kb on - strand, within Pf1N1B4_764at 868.863 kb on - strand, within Pf1N1B4_764at 868.914 kb on + strand, within Pf1N1B4_764at 869.092 kb on + strandat 869.093 kb on - strandat 869.093 kb on - strandat 869.093 kb on - strandat 869.183 kb on + strandat 869.184 kb on - strandat 869.184 kb on - strandat 869.184 kb on - strandat 869.184 kb on - strandat 869.184 kb on - strandat 869.184 kb on - strandat 869.355 kb on - strand, within Pf1N1B4_765at 869.355 kb on - strand, within Pf1N1B4_765at 869.602 kb on + strand, within Pf1N1B4_765at 869.602 kb on + strand, within Pf1N1B4_765at 869.602 kb on + strand, within Pf1N1B4_765at 869.602 kb on + strandat 869.629 kb on + strand, within Pf1N1B4_765at 869.629 kb on + strand, within Pf1N1B4_765at 869.736 kb on - strandat 869.751 kb on - strandat 869.763 kb on + strandat 869.763 kb on + strandat 869.763 kb on + strandat 869.763 kb on + strandat 869.763 kb on + strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.764 kb on - strandat 869.771 kb on + strandat 869.772 kb on - strandat 869.855 kb on + strandat 869.936 kb on + strandat 869.936 kb on + strandat 869.936 kb on + strandat 870.073 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1
remove
867,628 + Pf1N1B4_763 0.48 -0.0
867,628 + Pf1N1B4_763 0.48 -0.0
867,629 - -3.0
867,629 - Pf1N1B4_763 0.48 -3.2
867,629 - Pf1N1B4_763 0.48 -0.0
867,757 - Pf1N1B4_763 0.60 -0.0
867,765 + Pf1N1B4_763 0.61 -0.0
867,814 - Pf1N1B4_763 0.65 -0.0
867,832 + Pf1N1B4_763 0.67 -0.0
867,833 - Pf1N1B4_763 0.67 -3.6
867,872 - Pf1N1B4_763 0.70 -0.0
867,872 - Pf1N1B4_763 0.70 -0.0
867,888 + Pf1N1B4_763 0.72 -2.3
867,888 + Pf1N1B4_763 0.72 -4.4
867,889 - Pf1N1B4_763 0.72 -0.0
867,889 - Pf1N1B4_763 0.72 -0.0
867,889 - Pf1N1B4_763 0.72 -0.0
868,090 + Pf1N1B4_763 0.90 -1.5
868,249 - -0.0
868,274 + -0.3
868,275 - -0.0
868,275 - -0.0
868,275 - -0.0
868,330 + -0.5
868,331 - -0.0
868,331 - -1.8
868,331 - -0.0
868,331 - -2.5
868,427 + Pf1N1B4_764 0.14 -0.0
868,428 - Pf1N1B4_764 0.14 -2.9
868,654 + Pf1N1B4_764 0.43 -0.0
868,655 - Pf1N1B4_764 0.43 -0.9
868,844 + Pf1N1B4_764 0.67 -3.9
868,844 + Pf1N1B4_764 0.67 -3.0
868,845 - Pf1N1B4_764 0.67 -0.0
868,845 - Pf1N1B4_764 0.67 -0.0
868,845 - Pf1N1B4_764 0.67 -1.5
868,845 - Pf1N1B4_764 0.67 -0.0
868,845 - Pf1N1B4_764 0.67 -0.0
868,845 - Pf1N1B4_764 0.67 -0.0
868,862 + Pf1N1B4_764 0.69 -0.0
868,863 - Pf1N1B4_764 0.70 -0.0
868,863 - Pf1N1B4_764 0.70 -0.0
868,863 - Pf1N1B4_764 0.70 -0.0
868,914 + Pf1N1B4_764 0.76 -3.1
869,092 + -0.0
869,093 - -0.0
869,093 - -3.4
869,093 - -0.0
869,183 + -0.6
869,184 - -0.0
869,184 - -0.0
869,184 - -0.0
869,184 - -0.0
869,184 - -0.0
869,184 - -2.4
869,355 - Pf1N1B4_765 0.29 -0.0
869,355 - Pf1N1B4_765 0.29 -1.7
869,602 + Pf1N1B4_765 0.82 -0.0
869,602 + Pf1N1B4_765 0.82 -0.0
869,602 + Pf1N1B4_765 0.82 -0.0
869,602 + -0.0
869,629 + Pf1N1B4_765 0.87 -1.1
869,629 + Pf1N1B4_765 0.87 -2.0
869,736 - -0.0
869,751 - -0.0
869,763 + -0.0
869,763 + -0.0
869,763 + -2.0
869,763 + -1.5
869,763 + -1.8
869,764 - -0.9
869,764 - -0.0
869,764 - -0.0
869,764 - -0.0
869,764 - -0.0
869,764 - -2.5
869,764 - -0.0
869,771 + -1.5
869,772 - -2.9
869,855 + -0.0
869,936 + -0.0
869,936 + -0.0
869,936 + -1.8
870,073 - -0.0

Or see this region's nucleotide sequence