Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_700 and Pf1N1B4_701 are separated by 172 nucleotides Pf1N1B4_701 and Pf1N1B4_702 are separated by 9 nucleotides
Pf1N1B4_700 - LysR-family transcriptional regulator clustered with PA0057, at 799,556 to 800,443
_700
Pf1N1B4_701 - FIG00954094: hypothetical protein, at 800,616 to 800,837
_701
Pf1N1B4_702 - Transcriptional regulator PobR, AraC family, at 800,847 to 801,758
_702
Position (kb) 800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 800.048 kb on + strand, within Pf1N1B4_700 at 800.048 kb on + strand, within Pf1N1B4_700 at 800.049 kb on - strand, within Pf1N1B4_700 at 800.049 kb on - strand, within Pf1N1B4_700 at 800.117 kb on + strand, within Pf1N1B4_700 at 800.117 kb on + strand, within Pf1N1B4_700 at 800.118 kb on - strand, within Pf1N1B4_700 at 800.118 kb on - strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.336 kb on + strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.337 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.346 kb on - strand, within Pf1N1B4_700 at 800.404 kb on + strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.405 kb on - strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.441 kb on + strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.442 kb on - strand at 800.565 kb on - strand at 800.615 kb on + strand at 800.615 kb on + strand at 800.615 kb on + strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.616 kb on - strand at 800.640 kb on - strand, within Pf1N1B4_701 at 800.640 kb on - strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.682 kb on + strand, within Pf1N1B4_701 at 800.683 kb on - strand at 800.723 kb on - strand, within Pf1N1B4_701 at 800.723 kb on - strand, within Pf1N1B4_701 at 800.724 kb on + strand, within Pf1N1B4_701 at 800.724 kb on + strand, within Pf1N1B4_701 at 800.725 kb on - strand at 800.725 kb on - strand, within Pf1N1B4_701 at 800.989 kb on + strand, within Pf1N1B4_702 at 800.989 kb on + strand, within Pf1N1B4_702 at 800.990 kb on - strand, within Pf1N1B4_702 at 801.007 kb on + strand, within Pf1N1B4_702 at 801.008 kb on - strand, within Pf1N1B4_702 at 801.263 kb on + strand at 801.356 kb on - strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.597 kb on + strand, within Pf1N1B4_702 at 801.598 kb on - strand, within Pf1N1B4_702 at 801.598 kb on - strand, within Pf1N1B4_702 at 801.681 kb on + strand at 801.681 kb on + strand at 801.681 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.715 kb on + strand at 801.716 kb on - strand at 801.816 kb on + strand at 801.816 kb on + strand at 801.816 kb on + strand at 801.817 kb on - strand at 801.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 800,048 + Pf1N1B4_700 0.55 -0.0 800,048 + Pf1N1B4_700 0.55 -2.8 800,049 - Pf1N1B4_700 0.56 -3.3 800,049 - Pf1N1B4_700 0.56 -1.6 800,117 + Pf1N1B4_700 0.63 -0.0 800,117 + Pf1N1B4_700 0.63 -2.4 800,118 - Pf1N1B4_700 0.63 -0.0 800,118 - Pf1N1B4_700 0.63 -0.0 800,336 + Pf1N1B4_700 0.88 -0.0 800,336 + Pf1N1B4_700 0.88 -0.0 800,336 + Pf1N1B4_700 0.88 -0.8 800,336 + Pf1N1B4_700 0.88 -0.0 800,336 + Pf1N1B4_700 0.88 -0.0 800,336 + Pf1N1B4_700 0.88 -2.5 800,336 + Pf1N1B4_700 0.88 -0.0 800,336 + Pf1N1B4_700 0.88 -0.0 800,337 - Pf1N1B4_700 0.88 -3.4 800,337 - Pf1N1B4_700 0.88 -1.0 800,337 - Pf1N1B4_700 0.88 -0.0 800,337 - Pf1N1B4_700 0.88 -0.0 800,337 - Pf1N1B4_700 0.88 -0.0 800,337 - Pf1N1B4_700 0.88 -0.0 800,346 - Pf1N1B4_700 0.89 -0.0 800,346 - Pf1N1B4_700 0.89 -0.0 800,346 - Pf1N1B4_700 0.89 -0.0 800,346 - Pf1N1B4_700 0.89 -0.0 800,404 + -0.0 800,405 - -1.8 800,405 - -1.6 800,405 - -1.6 800,405 - -3.1 800,441 + -0.0 800,441 + -0.0 800,441 + -0.0 800,441 + -0.0 800,441 + -0.0 800,442 - -0.0 800,442 - -2.5 800,442 - -2.9 800,442 - -0.0 800,442 - -0.0 800,442 - -1.1 800,442 - -0.0 800,442 - -0.0 800,442 - -0.0 800,565 - -0.0 800,615 + -1.6 800,615 + -0.0 800,615 + -0.0 800,616 - -2.2 800,616 - -0.8 800,616 - -3.5 800,616 - -0.6 800,616 - -0.0 800,616 - -3.1 800,616 - -0.0 800,640 - Pf1N1B4_701 0.11 -0.0 800,640 - Pf1N1B4_701 0.11 -0.0 800,682 + Pf1N1B4_701 0.30 -0.0 800,682 + Pf1N1B4_701 0.30 -3.7 800,682 + Pf1N1B4_701 0.30 -2.7 800,683 - -2.9 800,723 - Pf1N1B4_701 0.48 -0.0 800,723 - Pf1N1B4_701 0.48 -0.0 800,724 + Pf1N1B4_701 0.49 -2.8 800,724 + Pf1N1B4_701 0.49 -0.0 800,725 - -1.9 800,725 - Pf1N1B4_701 0.49 -3.2 800,989 + Pf1N1B4_702 0.16 -2.5 800,989 + Pf1N1B4_702 0.16 -3.2 800,990 - Pf1N1B4_702 0.16 -2.1 801,007 + Pf1N1B4_702 0.18 -0.0 801,008 - Pf1N1B4_702 0.18 -2.4 801,263 + -0.0 801,356 - Pf1N1B4_702 0.56 -3.2 801,597 + Pf1N1B4_702 0.82 -0.0 801,597 + Pf1N1B4_702 0.82 -0.0 801,597 + Pf1N1B4_702 0.82 -0.0 801,597 + Pf1N1B4_702 0.82 -0.9 801,597 + Pf1N1B4_702 0.82 -3.9 801,597 + Pf1N1B4_702 0.82 -0.0 801,598 - Pf1N1B4_702 0.82 -0.0 801,598 - Pf1N1B4_702 0.82 -0.0 801,681 + -0.0 801,681 + -0.0 801,681 + -0.0 801,715 + -0.0 801,715 + -0.0 801,715 + -0.0 801,715 + -0.0 801,716 - -0.0 801,816 + -0.0 801,816 + -0.0 801,816 + -0.0 801,817 - -0.0 801,817 - -4.5
Or see this region's nucleotide sequence