Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_660 and Pf1N1B4_661 are separated by 219 nucleotides Pf1N1B4_661 and Pf1N1B4_662 are separated by 276 nucleotides Pf1N1B4_662 and Pf1N1B4_663 overlap by 4 nucleotides
Pf1N1B4_660 - Chemotactic transducer, at 756,803 to 758,692
_660
Pf1N1B4_661 - glycosyl transferase, group 1 family protein, at 758,912 to 760,033
_661
Pf1N1B4_662 - FIG00955875: hypothetical protein, at 760,310 to 760,801
_662
Pf1N1B4_663 - FIG00955324: hypothetical protein, at 760,798 to 761,793
_663
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 757.957 kb on + strand, within Pf1N1B4_660 at 757.957 kb on + strand, within Pf1N1B4_660 at 758.582 kb on - strand at 758.582 kb on - strand at 758.582 kb on - strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.756 kb on - strand at 758.756 kb on - strand at 758.756 kb on - strand at 758.865 kb on + strand at 758.865 kb on + strand at 758.865 kb on + strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.874 kb on + strand at 758.875 kb on - strand at 758.875 kb on - strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.948 kb on + strand at 758.949 kb on - strand at 758.949 kb on - strand at 758.978 kb on + strand at 758.978 kb on + strand at 758.979 kb on - strand at 758.979 kb on - strand at 758.979 kb on - strand at 759.194 kb on + strand, within Pf1N1B4_661 at 759.257 kb on + strand, within Pf1N1B4_661 at 759.307 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.327 kb on - strand at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.341 kb on + strand, within Pf1N1B4_661 at 759.341 kb on + strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.344 kb on - strand, within Pf1N1B4_661 at 759.344 kb on - strand, within Pf1N1B4_661 at 759.389 kb on - strand, within Pf1N1B4_661 at 759.424 kb on - strand, within Pf1N1B4_661 at 759.508 kb on + strand, within Pf1N1B4_661 at 759.509 kb on - strand, within Pf1N1B4_661 at 759.607 kb on - strand at 759.947 kb on + strand at 759.947 kb on + strand at 759.947 kb on + strand at 759.948 kb on - strand at 759.948 kb on - strand at 759.987 kb on - strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.179 kb on - strand at 760.260 kb on + strand at 760.323 kb on - strand at 760.323 kb on - strand at 760.323 kb on - strand at 760.343 kb on + strand at 760.407 kb on - strand, within Pf1N1B4_662 at 760.407 kb on - strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.409 kb on - strand at 760.409 kb on - strand, within Pf1N1B4_662 at 760.409 kb on - strand, within Pf1N1B4_662 at 760.409 kb on - strand at 760.409 kb on - strand, within Pf1N1B4_662
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 757,957 + Pf1N1B4_660 0.61 -0.0 757,957 + Pf1N1B4_660 0.61 -1.8 758,582 - -0.0 758,582 - -3.4 758,582 - -2.3 758,677 + -2.5 758,677 + -3.1 758,677 + -0.1 758,677 + -0.1 758,755 + -4.4 758,755 + -0.1 758,755 + -2.2 758,755 + -3.6 758,755 + -1.9 758,755 + -0.1 758,756 - -2.4 758,756 - -3.5 758,756 - -2.1 758,865 + -0.1 758,865 + -1.6 758,865 + -0.1 758,866 - -3.5 758,866 - -0.1 758,866 - -0.1 758,866 - -2.1 758,866 - -0.1 758,866 - -2.7 758,866 - -0.1 758,866 - -2.0 758,866 - -0.1 758,874 + -0.7 758,875 - -0.1 758,875 - -2.5 758,876 + -0.1 758,876 + -1.7 758,876 + -2.5 758,876 + -2.1 758,876 + -0.1 758,876 + -0.1 758,876 + -0.1 758,876 + -2.4 758,876 + -0.1 758,876 + -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -2.5 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -0.1 758,877 - -1.4 758,877 - -1.7 758,877 - -0.1 758,877 - -1.3 758,937 + -0.1 758,937 + -0.1 758,937 + -2.4 758,937 + -0.1 758,937 + -0.1 758,938 - -1.5 758,938 - -0.1 758,938 - -2.8 758,938 - -0.1 758,938 - -0.1 758,938 - -1.6 758,938 - -2.0 758,938 - -1.9 758,938 - -0.7 758,948 + -0.1 758,949 - -0.1 758,949 - -0.1 758,978 + -1.7 758,978 + -0.1 758,979 - -1.5 758,979 - -0.1 758,979 - -2.8 759,194 + Pf1N1B4_661 0.25 -0.1 759,257 + Pf1N1B4_661 0.31 -0.1 759,307 + Pf1N1B4_661 0.35 -2.4 759,326 + Pf1N1B4_661 0.37 -0.1 759,326 + Pf1N1B4_661 0.37 -0.1 759,326 + Pf1N1B4_661 0.37 -0.1 759,327 - -0.1 759,327 - Pf1N1B4_661 0.37 -0.1 759,327 - Pf1N1B4_661 0.37 -0.1 759,327 - Pf1N1B4_661 0.37 -0.1 759,327 - Pf1N1B4_661 0.37 -1.3 759,327 - Pf1N1B4_661 0.37 -0.1 759,327 - Pf1N1B4_661 0.37 -0.1 759,341 + Pf1N1B4_661 0.38 -0.1 759,341 + Pf1N1B4_661 0.38 -0.1 759,342 - Pf1N1B4_661 0.38 -0.1 759,342 - Pf1N1B4_661 0.38 -1.5 759,342 - Pf1N1B4_661 0.38 -0.1 759,342 - Pf1N1B4_661 0.38 -0.1 759,343 + Pf1N1B4_661 0.38 -0.9 759,343 + Pf1N1B4_661 0.38 -0.1 759,343 + Pf1N1B4_661 0.38 -3.8 759,343 + Pf1N1B4_661 0.38 -0.1 759,344 - Pf1N1B4_661 0.39 -0.1 759,344 - Pf1N1B4_661 0.39 -0.1 759,389 - Pf1N1B4_661 0.43 -0.1 759,424 - Pf1N1B4_661 0.46 -2.1 759,508 + Pf1N1B4_661 0.53 -0.1 759,509 - Pf1N1B4_661 0.53 -2.2 759,607 - -2.1 759,947 + -1.5 759,947 + -0.1 759,947 + -1.6 759,948 - -0.1 759,948 - -3.3 759,987 - -5.3 760,178 + -0.0 760,178 + -0.0 760,179 - -0.0 760,260 + -0.0 760,323 - -0.0 760,323 - -0.0 760,323 - -0.0 760,343 + -0.0 760,407 - Pf1N1B4_662 0.20 -2.1 760,407 - Pf1N1B4_662 0.20 -0.0 760,408 + Pf1N1B4_662 0.20 -3.7 760,408 + Pf1N1B4_662 0.20 -0.0 760,408 + Pf1N1B4_662 0.20 -0.0 760,408 + Pf1N1B4_662 0.20 -2.9 760,409 - +0.2 760,409 - Pf1N1B4_662 0.20 -3.1 760,409 - Pf1N1B4_662 0.20 -4.5 760,409 - -0.0 760,409 - Pf1N1B4_662 0.20 -0.0
Or see this region's nucleotide sequence