Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_619 and Pf1N1B4_620 are separated by 457 nucleotides Pf1N1B4_620 and Pf1N1B4_621 are separated by 11 nucleotides
Pf1N1B4_619 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 715,265 to 716,773
_619
Pf1N1B4_620 - Glycine cleavage system H protein, at 717,231 to 717,614
_620
Pf1N1B4_621 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 717,626 to 720,478
_621
Position (kb) 717
718 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 716.396 kb on + strand, within Pf1N1B4_619 at 716.397 kb on - strand, within Pf1N1B4_619 at 716.460 kb on - strand at 716.472 kb on + strand, within Pf1N1B4_619 at 716.670 kb on - strand at 716.746 kb on + strand at 716.746 kb on + strand at 716.746 kb on + strand at 716.747 kb on - strand at 716.747 kb on - strand at 716.747 kb on - strand at 716.750 kb on + strand at 716.751 kb on - strand at 716.757 kb on + strand at 716.757 kb on + strand at 716.757 kb on + strand at 716.758 kb on - strand at 716.758 kb on - strand at 716.758 kb on - strand at 716.761 kb on + strand at 716.761 kb on + strand at 716.761 kb on + strand at 716.762 kb on - strand at 716.762 kb on - strand at 716.762 kb on - strand at 716.762 kb on - strand at 716.762 kb on - strand at 716.762 kb on - strand at 716.843 kb on - strand at 716.846 kb on + strand at 716.846 kb on + strand at 716.846 kb on + strand at 716.847 kb on - strand at 716.858 kb on + strand at 716.859 kb on - strand at 716.871 kb on + strand at 716.871 kb on + strand at 716.872 kb on - strand at 716.872 kb on - strand at 716.872 kb on - strand at 716.872 kb on - strand at 716.872 kb on - strand at 717.072 kb on - strand at 717.221 kb on - strand at 717.426 kb on + strand, within Pf1N1B4_620 at 717.426 kb on + strand, within Pf1N1B4_620 at 717.426 kb on + strand, within Pf1N1B4_620 at 717.426 kb on + strand, within Pf1N1B4_620 at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand, within Pf1N1B4_620 at 717.427 kb on - strand at 717.580 kb on - strand at 717.637 kb on + strand at 717.637 kb on + strand at 717.638 kb on - strand at 717.869 kb on + strand at 717.869 kb on + strand at 717.869 kb on + strand at 717.870 kb on - strand at 717.870 kb on - strand at 717.870 kb on - strand at 717.885 kb on - strand at 717.898 kb on + strand at 717.899 kb on - strand at 717.899 kb on - strand at 717.899 kb on - strand at 717.899 kb on - strand at 717.954 kb on - strand, within Pf1N1B4_621 at 717.954 kb on - strand, within Pf1N1B4_621 at 717.963 kb on - strand, within Pf1N1B4_621 at 718.475 kb on + strand at 718.475 kb on + strand, within Pf1N1B4_621 at 718.592 kb on - strand, within Pf1N1B4_621
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 716,396 + Pf1N1B4_619 0.75 -0.1 716,397 - Pf1N1B4_619 0.75 -0.1 716,460 - -2.3 716,472 + Pf1N1B4_619 0.80 -0.1 716,670 - -0.1 716,746 + -0.1 716,746 + -1.8 716,746 + -0.1 716,747 - -0.1 716,747 - -0.1 716,747 - -0.1 716,750 + -1.8 716,751 - -0.1 716,757 + -0.1 716,757 + -0.1 716,757 + -2.3 716,758 - -2.0 716,758 - -3.5 716,758 - -0.1 716,761 + -0.1 716,761 + -0.1 716,761 + -1.8 716,762 - -0.1 716,762 - -0.1 716,762 - -1.8 716,762 - -0.1 716,762 - -0.1 716,762 - -2.0 716,843 - -2.6 716,846 + -3.6 716,846 + -0.1 716,846 + -0.1 716,847 - -0.1 716,858 + -2.2 716,859 - -0.1 716,871 + -1.6 716,871 + -2.4 716,872 - -0.1 716,872 - -1.6 716,872 - -1.3 716,872 - -3.1 716,872 - -2.4 717,072 - -0.1 717,221 - -0.1 717,426 + Pf1N1B4_620 0.51 -3.0 717,426 + Pf1N1B4_620 0.51 -0.1 717,426 + Pf1N1B4_620 0.51 -3.0 717,426 + Pf1N1B4_620 0.51 -0.1 717,427 - Pf1N1B4_620 0.51 -0.1 717,427 - Pf1N1B4_620 0.51 -3.2 717,427 - Pf1N1B4_620 0.51 -0.1 717,427 - -0.1 717,427 - Pf1N1B4_620 0.51 -0.1 717,427 - Pf1N1B4_620 0.51 -0.1 717,427 - Pf1N1B4_620 0.51 -0.1 717,427 - -2.3 717,580 - -0.1 717,637 + -0.1 717,637 + -0.1 717,638 - -0.1 717,869 + -0.1 717,869 + -0.1 717,869 + -1.1 717,870 - -0.1 717,870 - -4.4 717,870 - -2.3 717,885 - -0.1 717,898 + -0.1 717,899 - -0.1 717,899 - -0.1 717,899 - -0.1 717,899 - -0.1 717,954 - Pf1N1B4_621 0.11 -0.1 717,954 - Pf1N1B4_621 0.11 -0.1 717,963 - Pf1N1B4_621 0.12 -0.1 718,475 + -2.6 718,475 + Pf1N1B4_621 0.30 -0.1 718,592 - Pf1N1B4_621 0.34 -2.8
Or see this region's nucleotide sequence