Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5844 and Pf1N1B4_5845 are separated by 322 nucleotides Pf1N1B4_5845 and Pf1N1B4_5846 are separated by 117 nucleotides Pf1N1B4_5846 and Pf1N1B4_5847 are separated by 101 nucleotides
Pf1N1B4_5844 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 278,578 to 279,357
_5844
Pf1N1B4_5845 - GMP synthase - Glutamine amidotransferase domain, at 279,680 to 280,321
_5845
Pf1N1B4_5846 - Rhodanese-related sulfurtransferase, at 280,439 to 280,873
_5846
Pf1N1B4_5847 - transcriptional activator FtrA, at 280,975 to 281,949
_5847
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 278.726 kb on + strand, within Pf1N1B4_5844 at 278.726 kb on + strand at 278.726 kb on + strand, within Pf1N1B4_5844 at 278.727 kb on - strand, within Pf1N1B4_5844 at 278.741 kb on + strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.742 kb on - strand, within Pf1N1B4_5844 at 278.753 kb on - strand, within Pf1N1B4_5844 at 279.033 kb on - strand, within Pf1N1B4_5844 at 279.033 kb on - strand at 279.033 kb on - strand, within Pf1N1B4_5844 at 279.035 kb on + strand at 279.035 kb on + strand at 279.035 kb on + strand, within Pf1N1B4_5844 at 279.036 kb on - strand, within Pf1N1B4_5844 at 279.359 kb on + strand at 279.359 kb on + strand at 279.360 kb on - strand at 279.360 kb on - strand at 279.362 kb on - strand at 279.362 kb on - strand at 279.483 kb on + strand at 279.483 kb on + strand at 279.484 kb on - strand at 279.484 kb on - strand at 279.487 kb on + strand at 279.489 kb on + strand at 279.516 kb on - strand at 279.840 kb on - strand, within Pf1N1B4_5845 at 280.369 kb on - strand at 280.369 kb on - strand at 280.369 kb on - strand at 280.403 kb on + strand at 280.404 kb on - strand at 280.612 kb on - strand, within Pf1N1B4_5846 at 280.774 kb on - strand, within Pf1N1B4_5846 at 280.880 kb on + strand at 280.880 kb on + strand at 280.881 kb on - strand at 280.914 kb on - strand at 280.914 kb on - strand at 281.011 kb on + strand at 281.012 kb on - strand at 281.197 kb on - strand, within Pf1N1B4_5847
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 278,726 + Pf1N1B4_5844 0.19 +0.0 278,726 + +0.0 278,726 + Pf1N1B4_5844 0.19 -2.9 278,727 - Pf1N1B4_5844 0.19 +0.0 278,741 + Pf1N1B4_5844 0.21 +0.0 278,742 - Pf1N1B4_5844 0.21 -2.4 278,742 - Pf1N1B4_5844 0.21 -2.3 278,742 - Pf1N1B4_5844 0.21 +0.0 278,753 - Pf1N1B4_5844 0.22 +0.0 279,033 - Pf1N1B4_5844 0.58 +0.0 279,033 - -2.9 279,033 - Pf1N1B4_5844 0.58 +0.0 279,035 + +0.0 279,035 + -2.0 279,035 + Pf1N1B4_5844 0.59 +0.0 279,036 - Pf1N1B4_5844 0.59 +0.0 279,359 + +0.0 279,359 + +0.0 279,360 - -3.5 279,360 - +0.0 279,362 - +0.0 279,362 - -3.1 279,483 + -2.5 279,483 + -2.3 279,484 - -1.9 279,484 - +0.0 279,487 + -3.6 279,489 + -1.6 279,516 - +0.0 279,840 - Pf1N1B4_5845 0.25 +0.0 280,369 - +0.0 280,369 - +0.0 280,369 - +0.0 280,403 + +0.0 280,404 - -2.8 280,612 - Pf1N1B4_5846 0.40 -1.5 280,774 - Pf1N1B4_5846 0.77 +0.0 280,880 + +0.0 280,880 + -1.9 280,881 - -0.3 280,914 - +0.0 280,914 - +0.0 281,011 + -2.5 281,012 - -3.1 281,197 - Pf1N1B4_5847 0.23 +0.0
Or see this region's nucleotide sequence