Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5791 and Pf1N1B4_5792 are separated by 74 nucleotides Pf1N1B4_5792 and Pf1N1B4_5793 are separated by 99 nucleotides
Pf1N1B4_5791 - hypothetical protein, at 229,111 to 229,446
_5791
Pf1N1B4_5792 - hypothetical protein, at 229,521 to 229,757
_5792
Pf1N1B4_5793 - Protein RtcB, at 229,857 to 231,083
_5793
Position (kb) 229
230 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 228.127 kb on + strand at 228.127 kb on + strand at 228.148 kb on + strand at 228.149 kb on - strand at 228.170 kb on + strand at 228.171 kb on - strand at 228.178 kb on + strand at 228.185 kb on - strand at 228.272 kb on + strand at 228.273 kb on - strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.334 kb on + strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.335 kb on - strand at 228.346 kb on - strand at 228.346 kb on - strand at 228.346 kb on - strand at 228.367 kb on + strand at 228.367 kb on + strand at 228.367 kb on + strand at 228.422 kb on + strand at 228.423 kb on - strand at 228.423 kb on - strand at 228.605 kb on + strand at 228.606 kb on - strand at 228.606 kb on - strand at 228.665 kb on - strand at 229.095 kb on - strand at 229.095 kb on - strand at 229.095 kb on - strand at 229.095 kb on - strand at 229.173 kb on - strand, within Pf1N1B4_5791 at 229.306 kb on + strand at 229.316 kb on - strand, within Pf1N1B4_5791 at 229.362 kb on + strand, within Pf1N1B4_5791 at 229.522 kb on + strand at 229.522 kb on + strand at 229.524 kb on + strand at 229.592 kb on - strand, within Pf1N1B4_5792 at 229.592 kb on - strand at 229.609 kb on + strand, within Pf1N1B4_5792 at 229.797 kb on - strand at 229.896 kb on + strand at 229.896 kb on + strand at 229.897 kb on - strand at 229.897 kb on - strand at 229.921 kb on + strand at 229.922 kb on - strand at 229.922 kb on - strand at 229.945 kb on + strand at 229.946 kb on - strand at 229.946 kb on - strand at 229.946 kb on - strand at 230.236 kb on + strand, within Pf1N1B4_5793 at 230.236 kb on + strand, within Pf1N1B4_5793 at 230.237 kb on - strand, within Pf1N1B4_5793 at 230.237 kb on - strand, within Pf1N1B4_5793 at 230.237 kb on - strand, within Pf1N1B4_5793 at 230.377 kb on + strand at 230.377 kb on + strand, within Pf1N1B4_5793
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 228,127 + -3.4 228,127 + +0.0 228,148 + +0.0 228,149 - -2.6 228,170 + -1.6 228,171 - +0.0 228,178 + -2.2 228,185 - +0.0 228,272 + +0.0 228,273 - +0.0 228,334 + +0.0 228,334 + +0.0 228,334 + -5.9 228,334 + +0.0 228,334 + -3.5 228,334 + +0.0 228,335 - +0.0 228,335 - +0.0 228,335 - +0.0 228,335 - -2.2 228,335 - +0.0 228,335 - -2.1 228,346 - +0.0 228,346 - +0.0 228,346 - -2.7 228,367 + +0.0 228,367 + +0.0 228,367 + +0.0 228,422 + +0.0 228,423 - +0.0 228,423 - +0.0 228,605 + +0.0 228,606 - -2.3 228,606 - -2.0 228,665 - +0.0 229,095 - -2.4 229,095 - -3.2 229,095 - -2.2 229,095 - -2.1 229,173 - Pf1N1B4_5791 0.18 +0.0 229,306 + -2.7 229,316 - Pf1N1B4_5791 0.61 -3.0 229,362 + Pf1N1B4_5791 0.75 +0.0 229,522 + -2.7 229,522 + +0.0 229,524 + -2.6 229,592 - Pf1N1B4_5792 0.30 -2.1 229,592 - -2.4 229,609 + Pf1N1B4_5792 0.37 -2.4 229,797 - +0.0 229,896 + +0.0 229,896 + -1.5 229,897 - +0.0 229,897 - +0.0 229,921 + -2.0 229,922 - -1.6 229,922 - -1.1 229,945 + -2.5 229,946 - -2.6 229,946 - -1.9 229,946 - +0.0 230,236 + Pf1N1B4_5793 0.31 +0.0 230,236 + Pf1N1B4_5793 0.31 +0.0 230,237 - Pf1N1B4_5793 0.31 -1.9 230,237 - Pf1N1B4_5793 0.31 -2.5 230,237 - Pf1N1B4_5793 0.31 -3.0 230,377 + +0.0 230,377 + Pf1N1B4_5793 0.42 +0.0
Or see this region's nucleotide sequence