Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5763 and Pf1N1B4_5764 are separated by 199 nucleotides Pf1N1B4_5764 and Pf1N1B4_5765 are separated by 24 nucleotides Pf1N1B4_5765 and Pf1N1B4_5766 are separated by 16 nucleotides Pf1N1B4_5766 and Pf1N1B4_5767 overlap by 4 nucleotides
Pf1N1B4_5763 - Nitric oxide reductase activation protein NorQ, at 202,142 to 202,933
_5763
Pf1N1B4_5764 - Cytochrome cd1 nitrite reductase (EC:1.7.2.1), at 203,133 to 204,824
_5764
Pf1N1B4_5765 - membrane c-type cytochrome cy, at 204,849 to 205,163
_5765
Pf1N1B4_5766 - Cytochrome c55X precursor NirC, at 205,180 to 205,506
_5766
Pf1N1B4_5767 - Heme d1 biosynthesis protein NirF, at 205,503 to 206,681
_5767
Position (kb) 203
204
205 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 202.270 kb on + strand, within Pf1N1B4_5763 at 202.501 kb on - strand, within Pf1N1B4_5763 at 202.764 kb on + strand, within Pf1N1B4_5763 at 202.902 kb on + strand at 202.902 kb on + strand at 202.903 kb on - strand at 202.903 kb on - strand at 203.053 kb on - strand at 203.053 kb on - strand at 203.069 kb on - strand at 203.436 kb on + strand, within Pf1N1B4_5764 at 203.437 kb on - strand, within Pf1N1B4_5764 at 203.437 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764 at 204.019 kb on - strand, within Pf1N1B4_5764 at 204.148 kb on - strand at 204.148 kb on - strand, within Pf1N1B4_5764 at 204.148 kb on - strand, within Pf1N1B4_5764 at 204.148 kb on - strand, within Pf1N1B4_5764 at 204.148 kb on - strand, within Pf1N1B4_5764 at 204.148 kb on - strand, within Pf1N1B4_5764 at 204.334 kb on - strand, within Pf1N1B4_5764 at 204.334 kb on - strand, within Pf1N1B4_5764 at 204.498 kb on + strand, within Pf1N1B4_5764 at 204.499 kb on - strand, within Pf1N1B4_5764 at 204.648 kb on + strand, within Pf1N1B4_5764 at 204.648 kb on + strand, within Pf1N1B4_5764 at 204.648 kb on + strand, within Pf1N1B4_5764 at 204.754 kb on + strand at 204.755 kb on - strand at 204.819 kb on + strand at 204.819 kb on + strand at 204.819 kb on + strand at 204.819 kb on + strand at 204.820 kb on - strand at 204.820 kb on - strand at 204.820 kb on - strand at 204.820 kb on - strand at 204.857 kb on + strand at 205.201 kb on - strand at 205.526 kb on - strand at 205.725 kb on + strand, within Pf1N1B4_5767 at 205.725 kb on + strand, within Pf1N1B4_5767 at 205.725 kb on + strand, within Pf1N1B4_5767 at 205.725 kb on + strand at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.726 kb on - strand, within Pf1N1B4_5767 at 205.796 kb on - strand, within Pf1N1B4_5767
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 202,270 + Pf1N1B4_5763 0.16 +0.0 202,501 - Pf1N1B4_5763 0.45 -5.1 202,764 + Pf1N1B4_5763 0.79 +0.0 202,902 + -3.4 202,902 + -3.8 202,903 - -5.3 202,903 - -3.6 203,053 - +0.0 203,053 - +0.0 203,069 - +0.0 203,436 + Pf1N1B4_5764 0.18 +0.2 203,437 - Pf1N1B4_5764 0.18 +0.7 203,437 - Pf1N1B4_5764 0.18 -0.1 203,908 - Pf1N1B4_5764 0.46 +0.0 203,908 - Pf1N1B4_5764 0.46 +0.0 203,908 - Pf1N1B4_5764 0.46 +1.7 204,019 - Pf1N1B4_5764 0.52 +1.1 204,148 - +0.0 204,148 - Pf1N1B4_5764 0.60 +0.0 204,148 - Pf1N1B4_5764 0.60 -1.8 204,148 - Pf1N1B4_5764 0.60 +0.0 204,148 - Pf1N1B4_5764 0.60 -0.2 204,148 - Pf1N1B4_5764 0.60 -0.2 204,334 - Pf1N1B4_5764 0.71 -0.2 204,334 - Pf1N1B4_5764 0.71 +0.5 204,498 + Pf1N1B4_5764 0.81 +0.1 204,499 - Pf1N1B4_5764 0.81 +0.9 204,648 + Pf1N1B4_5764 0.90 +0.0 204,648 + Pf1N1B4_5764 0.90 +0.0 204,648 + Pf1N1B4_5764 0.90 +0.3 204,754 + +0.0 204,755 - +0.1 204,819 + +0.0 204,819 + +0.0 204,819 + -0.9 204,819 + +0.0 204,820 - +0.0 204,820 - +0.0 204,820 - +1.6 204,820 - +0.0 204,857 + -1.0 205,201 - +0.0 205,526 - +0.0 205,725 + Pf1N1B4_5767 0.19 +0.6 205,725 + Pf1N1B4_5767 0.19 +0.0 205,725 + Pf1N1B4_5767 0.19 +0.0 205,725 + +0.0 205,726 - Pf1N1B4_5767 0.19 +1.6 205,726 - Pf1N1B4_5767 0.19 +0.0 205,726 - Pf1N1B4_5767 0.19 +0.0 205,726 - Pf1N1B4_5767 0.19 +0.0 205,726 - Pf1N1B4_5767 0.19 +0.0 205,726 - Pf1N1B4_5767 0.19 +0.5 205,796 - Pf1N1B4_5767 0.25 +0.0
Or see this region's nucleotide sequence