Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_551 and Pf1N1B4_552 are separated by 123 nucleotides Pf1N1B4_552 and Pf1N1B4_553 are separated by 101 nucleotides Pf1N1B4_553 and Pf1N1B4_554 are separated by 66 nucleotides
Pf1N1B4_551 - Lipid A export ATP-binding/permease protein MsbA, at 647,752 to 649,584
_551
Pf1N1B4_552 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 649,708 to 650,196
_552
Pf1N1B4_553 - Bacterial transcription activator, effector binding protein, at 650,298 to 650,786
_553
Pf1N1B4_554 - Putative threonine efflux protein, at 650,853 to 651,515
_554
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 648.985 kb on + strand, within Pf1N1B4_551 at 648.985 kb on + strand, within Pf1N1B4_551 at 648.985 kb on + strand, within Pf1N1B4_551 at 649.534 kb on + strand at 649.535 kb on - strand at 649.772 kb on + strand, within Pf1N1B4_552 at 649.773 kb on - strand, within Pf1N1B4_552 at 649.773 kb on - strand, within Pf1N1B4_552 at 649.773 kb on - strand, within Pf1N1B4_552 at 649.793 kb on + strand, within Pf1N1B4_552 at 649.793 kb on + strand, within Pf1N1B4_552 at 649.793 kb on + strand, within Pf1N1B4_552 at 649.794 kb on - strand, within Pf1N1B4_552 at 649.803 kb on + strand, within Pf1N1B4_552 at 649.804 kb on - strand, within Pf1N1B4_552 at 649.905 kb on - strand, within Pf1N1B4_552 at 650.147 kb on + strand, within Pf1N1B4_552 at 650.147 kb on + strand, within Pf1N1B4_552 at 650.147 kb on + strand, within Pf1N1B4_552 at 650.147 kb on + strand, within Pf1N1B4_552 at 650.148 kb on - strand at 650.148 kb on - strand at 650.148 kb on - strand at 650.233 kb on + strand at 650.233 kb on + strand at 650.233 kb on + strand at 650.233 kb on + strand at 650.299 kb on + strand at 650.300 kb on - strand at 650.300 kb on - strand at 650.300 kb on - strand at 650.307 kb on + strand at 650.365 kb on + strand, within Pf1N1B4_553 at 650.366 kb on - strand, within Pf1N1B4_553 at 650.431 kb on + strand, within Pf1N1B4_553 at 650.431 kb on + strand, within Pf1N1B4_553 at 650.431 kb on + strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.432 kb on - strand, within Pf1N1B4_553 at 650.486 kb on - strand, within Pf1N1B4_553 at 650.486 kb on - strand, within Pf1N1B4_553 at 650.488 kb on + strand, within Pf1N1B4_553 at 650.489 kb on - strand, within Pf1N1B4_553 at 650.499 kb on + strand, within Pf1N1B4_553 at 650.500 kb on - strand, within Pf1N1B4_553 at 650.500 kb on - strand, within Pf1N1B4_553 at 650.500 kb on - strand, within Pf1N1B4_553 at 650.500 kb on - strand, within Pf1N1B4_553 at 650.515 kb on + strand, within Pf1N1B4_553 at 650.563 kb on + strand, within Pf1N1B4_553 at 650.564 kb on - strand, within Pf1N1B4_553 at 650.592 kb on - strand, within Pf1N1B4_553 at 650.605 kb on + strand, within Pf1N1B4_553 at 650.605 kb on + strand, within Pf1N1B4_553 at 650.606 kb on - strand, within Pf1N1B4_553 at 650.827 kb on - strand at 650.827 kb on - strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.828 kb on + strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.829 kb on - strand at 650.855 kb on - strand at 650.855 kb on - strand at 650.855 kb on - strand at 650.900 kb on + strand at 650.900 kb on + strand at 650.901 kb on - strand at 650.901 kb on - strand at 650.933 kb on - strand, within Pf1N1B4_554 at 650.966 kb on - strand, within Pf1N1B4_554
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 648,985 + Pf1N1B4_551 0.67 -0.0 648,985 + Pf1N1B4_551 0.67 -0.0 648,985 + Pf1N1B4_551 0.67 -0.0 649,534 + -0.0 649,535 - -0.0 649,772 + Pf1N1B4_552 0.13 -0.0 649,773 - Pf1N1B4_552 0.13 -3.0 649,773 - Pf1N1B4_552 0.13 -2.9 649,773 - Pf1N1B4_552 0.13 -0.0 649,793 + Pf1N1B4_552 0.17 -0.0 649,793 + Pf1N1B4_552 0.17 -0.0 649,793 + Pf1N1B4_552 0.17 -0.0 649,794 - Pf1N1B4_552 0.18 -3.6 649,803 + Pf1N1B4_552 0.19 -2.9 649,804 - Pf1N1B4_552 0.20 -2.4 649,905 - Pf1N1B4_552 0.40 -0.0 650,147 + Pf1N1B4_552 0.90 -0.0 650,147 + Pf1N1B4_552 0.90 -0.0 650,147 + Pf1N1B4_552 0.90 -0.0 650,147 + Pf1N1B4_552 0.90 -0.0 650,148 - -0.0 650,148 - -0.0 650,148 - -0.0 650,233 + -3.3 650,233 + -0.0 650,233 + -1.4 650,233 + -4.0 650,299 + -2.1 650,300 - -2.4 650,300 - -0.0 650,300 - -0.0 650,307 + -0.0 650,365 + Pf1N1B4_553 0.14 -2.0 650,366 - Pf1N1B4_553 0.14 -0.0 650,431 + Pf1N1B4_553 0.27 -0.0 650,431 + Pf1N1B4_553 0.27 -0.0 650,431 + Pf1N1B4_553 0.27 -1.0 650,432 - Pf1N1B4_553 0.27 -0.0 650,432 - Pf1N1B4_553 0.27 -4.2 650,432 - Pf1N1B4_553 0.27 -0.0 650,432 - Pf1N1B4_553 0.27 -2.1 650,432 - Pf1N1B4_553 0.27 -3.2 650,432 - Pf1N1B4_553 0.27 -0.0 650,432 - Pf1N1B4_553 0.27 -2.0 650,486 - Pf1N1B4_553 0.38 -0.0 650,486 - Pf1N1B4_553 0.38 -0.0 650,488 + Pf1N1B4_553 0.39 -2.2 650,489 - Pf1N1B4_553 0.39 -0.0 650,499 + Pf1N1B4_553 0.41 -0.0 650,500 - Pf1N1B4_553 0.41 -0.0 650,500 - Pf1N1B4_553 0.41 -0.0 650,500 - Pf1N1B4_553 0.41 -0.0 650,500 - Pf1N1B4_553 0.41 -0.0 650,515 + Pf1N1B4_553 0.44 -0.0 650,563 + Pf1N1B4_553 0.54 -2.3 650,564 - Pf1N1B4_553 0.54 +1.0 650,592 - Pf1N1B4_553 0.60 -2.4 650,605 + Pf1N1B4_553 0.63 -0.0 650,605 + Pf1N1B4_553 0.63 -2.5 650,606 - Pf1N1B4_553 0.63 -0.0 650,827 - -0.0 650,827 - -0.0 650,828 + -1.8 650,828 + -0.0 650,828 + -0.0 650,828 + -2.2 650,828 + -0.0 650,828 + -0.0 650,828 + -0.0 650,829 - -1.9 650,829 - -2.5 650,829 - -0.0 650,829 - -0.0 650,829 - -0.0 650,829 - -4.1 650,829 - -0.5 650,855 - -2.2 650,855 - -2.5 650,855 - -0.0 650,900 + -0.0 650,900 + -1.6 650,901 - -0.0 650,901 - -0.0 650,933 - Pf1N1B4_554 0.12 -0.0 650,966 - Pf1N1B4_554 0.17 -0.0
Or see this region's nucleotide sequence