Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5423 and Pf1N1B4_5424 are separated by 5 nucleotides Pf1N1B4_5424 and Pf1N1B4_5425 are separated by 543 nucleotides Pf1N1B4_5425 and Pf1N1B4_5426 are separated by 461 nucleotides Pf1N1B4_5426 and Pf1N1B4_5427 are separated by 130 nucleotides
Pf1N1B4_5423 - RecD-like DNA helicase YrrC, at 162,581 to 164,764
_5423
Pf1N1B4_5424 - hypothetical protein, at 164,770 to 164,952
_5424
Pf1N1B4_5425 - DNA-binding protein HU-beta, at 165,496 to 165,771
_5425
Pf1N1B4_5426 - hypothetical protein, at 166,233 to 166,580
_5426
Pf1N1B4_5427 - C4-type zinc finger protein, DksA/TraR family, at 166,711 to 167,184
_5427
Position (kb) 165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 164.499 kb on + strand, within Pf1N1B4_5423 at 164.500 kb on - strand, within Pf1N1B4_5423 at 164.500 kb on - strand, within Pf1N1B4_5423 at 164.533 kb on + strand, within Pf1N1B4_5423 at 164.533 kb on + strand, within Pf1N1B4_5423 at 164.740 kb on + strand at 164.839 kb on - strand, within Pf1N1B4_5424 at 164.839 kb on - strand at 164.895 kb on - strand, within Pf1N1B4_5424 at 164.895 kb on - strand, within Pf1N1B4_5424 at 165.160 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.269 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.279 kb on + strand at 165.279 kb on + strand at 165.280 kb on - strand at 165.337 kb on + strand at 165.419 kb on + strand at 165.419 kb on + strand at 165.535 kb on - strand, within Pf1N1B4_5425 at 165.640 kb on + strand, within Pf1N1B4_5425 at 165.641 kb on - strand, within Pf1N1B4_5425 at 165.641 kb on - strand, within Pf1N1B4_5425 at 165.724 kb on + strand, within Pf1N1B4_5425 at 165.725 kb on - strand, within Pf1N1B4_5425 at 165.828 kb on - strand at 165.848 kb on + strand at 165.849 kb on - strand at 165.903 kb on - strand at 165.949 kb on + strand at 165.950 kb on - strand at 165.950 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.128 kb on - strand at 166.211 kb on - strand at 166.222 kb on + strand at 166.222 kb on + strand at 166.223 kb on - strand at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.347 kb on - strand, within Pf1N1B4_5426 at 166.371 kb on + strand, within Pf1N1B4_5426 at 166.372 kb on - strand, within Pf1N1B4_5426 at 166.439 kb on - strand, within Pf1N1B4_5426 at 166.532 kb on - strand, within Pf1N1B4_5426 at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.604 kb on - strand at 166.604 kb on - strand at 166.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 164,499 + Pf1N1B4_5423 0.88 -0.0 164,500 - Pf1N1B4_5423 0.88 -0.0 164,500 - Pf1N1B4_5423 0.88 -0.0 164,533 + Pf1N1B4_5423 0.89 -2.5 164,533 + Pf1N1B4_5423 0.89 -0.0 164,740 + -2.1 164,839 - Pf1N1B4_5424 0.38 -2.4 164,839 - -0.0 164,895 - Pf1N1B4_5424 0.68 -0.0 164,895 - Pf1N1B4_5424 0.68 -0.0 165,160 + -0.0 165,244 + -0.0 165,244 + -0.0 165,244 + -0.0 165,244 + -0.0 165,244 + -4.0 165,269 + -0.0 165,276 + -0.0 165,276 + -0.0 165,276 + -0.0 165,276 + -3.8 165,279 + -0.0 165,279 + -0.0 165,280 - -0.0 165,337 + -2.3 165,419 + -2.7 165,419 + -0.0 165,535 - Pf1N1B4_5425 0.14 -3.7 165,640 + Pf1N1B4_5425 0.52 -3.6 165,641 - Pf1N1B4_5425 0.53 -0.0 165,641 - Pf1N1B4_5425 0.53 -0.0 165,724 + Pf1N1B4_5425 0.83 -0.0 165,725 - Pf1N1B4_5425 0.83 -1.0 165,828 - -2.4 165,848 + -1.7 165,849 - -0.0 165,903 - -3.2 165,949 + -0.0 165,950 - -0.0 165,950 - -0.0 166,031 - -0.0 166,031 - -0.0 166,031 - -1.6 166,128 - -0.0 166,211 - -0.0 166,222 + -0.0 166,222 + -0.0 166,223 - -2.8 166,274 + Pf1N1B4_5426 0.12 -0.0 166,274 + Pf1N1B4_5426 0.12 -0.0 166,274 + Pf1N1B4_5426 0.12 -0.0 166,275 - Pf1N1B4_5426 0.12 -2.8 166,275 - Pf1N1B4_5426 0.12 -1.8 166,287 + Pf1N1B4_5426 0.16 -2.5 166,287 + Pf1N1B4_5426 0.16 -2.2 166,287 + Pf1N1B4_5426 0.16 -2.9 166,287 + Pf1N1B4_5426 0.16 -0.0 166,287 + Pf1N1B4_5426 0.16 -2.8 166,288 - Pf1N1B4_5426 0.16 -0.0 166,288 - Pf1N1B4_5426 0.16 -0.0 166,288 - Pf1N1B4_5426 0.16 -1.2 166,347 - Pf1N1B4_5426 0.33 -2.4 166,371 + Pf1N1B4_5426 0.40 -0.0 166,372 - Pf1N1B4_5426 0.40 -0.0 166,439 - Pf1N1B4_5426 0.59 -2.9 166,532 - Pf1N1B4_5426 0.86 -0.4 166,603 + -0.0 166,603 + -0.0 166,603 + -0.0 166,603 + -0.0 166,603 + -2.1 166,604 - -2.1 166,604 - -2.1 166,604 - -3.3
Or see this region's nucleotide sequence