Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5363 and Pf1N1B4_5364 are separated by 184 nucleotides Pf1N1B4_5364 and Pf1N1B4_5365 are separated by 64 nucleotides Pf1N1B4_5365 and Pf1N1B4_5366 are separated by 145 nucleotides Pf1N1B4_5366 and Pf1N1B4_5367 are separated by 291 nucleotides
Pf1N1B4_5363 - hypothetical protein, at 97,638 to 98,639
_5363
Pf1N1B4_5364 - hypothetical protein, at 98,824 to 98,964
_5364
Pf1N1B4_5365 - hypothetical protein, at 99,029 to 99,457
_5365
Pf1N1B4_5366 - hypothetical protein, at 99,603 to 99,803
_5366
Pf1N1B4_5367 - hypothetical protein, at 100,095 to 100,583
_5367
Position (kb) 99
100 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 98.038 kb on + strand, within Pf1N1B4_5363 at 98.038 kb on + strand, within Pf1N1B4_5363 at 98.039 kb on - strand, within Pf1N1B4_5363 at 98.185 kb on + strand, within Pf1N1B4_5363 at 98.230 kb on + strand, within Pf1N1B4_5363 at 98.240 kb on + strand, within Pf1N1B4_5363 at 98.266 kb on + strand, within Pf1N1B4_5363 at 98.266 kb on + strand at 98.335 kb on + strand, within Pf1N1B4_5363 at 98.479 kb on + strand, within Pf1N1B4_5363 at 98.479 kb on + strand, within Pf1N1B4_5363 at 98.480 kb on - strand, within Pf1N1B4_5363 at 98.482 kb on + strand, within Pf1N1B4_5363 at 98.483 kb on - strand, within Pf1N1B4_5363 at 98.557 kb on + strand at 98.656 kb on + strand at 98.657 kb on - strand at 98.657 kb on - strand at 98.661 kb on + strand at 98.662 kb on - strand at 98.662 kb on - strand at 98.678 kb on + strand at 98.678 kb on + strand at 98.678 kb on + strand at 98.679 kb on - strand at 98.692 kb on + strand at 98.774 kb on - strand at 98.797 kb on + strand at 98.797 kb on + strand at 98.797 kb on + strand at 98.823 kb on + strand at 98.824 kb on - strand at 98.932 kb on - strand at 98.978 kb on + strand at 98.979 kb on - strand at 98.979 kb on - strand at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.091 kb on - strand, within Pf1N1B4_5365 at 99.160 kb on + strand, within Pf1N1B4_5365 at 99.160 kb on + strand, within Pf1N1B4_5365 at 99.160 kb on + strand at 99.161 kb on - strand, within Pf1N1B4_5365 at 99.482 kb on + strand at 99.482 kb on + strand at 99.483 kb on - strand at 99.583 kb on + strand at 99.583 kb on + strand at 99.584 kb on - strand at 99.584 kb on - strand at 99.746 kb on + strand, within Pf1N1B4_5366 at 99.895 kb on + strand at 99.896 kb on - strand at 99.896 kb on - strand at 99.896 kb on - strand at 99.896 kb on - strand at 100.062 kb on + strand at 100.077 kb on + strand at 100.077 kb on + strand at 100.077 kb on + strand at 100.174 kb on + strand, within Pf1N1B4_5367 at 100.249 kb on + strand, within Pf1N1B4_5367 at 100.273 kb on + strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.314 kb on - strand, within Pf1N1B4_5367
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 98,038 + Pf1N1B4_5363 0.40 -2.1 98,038 + Pf1N1B4_5363 0.40 -0.0 98,039 - Pf1N1B4_5363 0.40 -1.2 98,185 + Pf1N1B4_5363 0.55 -0.0 98,230 + Pf1N1B4_5363 0.59 -0.0 98,240 + Pf1N1B4_5363 0.60 -0.0 98,266 + Pf1N1B4_5363 0.63 -0.0 98,266 + -0.0 98,335 + Pf1N1B4_5363 0.70 -0.0 98,479 + Pf1N1B4_5363 0.84 -0.0 98,479 + Pf1N1B4_5363 0.84 -2.4 98,480 - Pf1N1B4_5363 0.84 -0.0 98,482 + Pf1N1B4_5363 0.84 -2.0 98,483 - Pf1N1B4_5363 0.84 -0.0 98,557 + -0.0 98,656 + -0.0 98,657 - -0.0 98,657 - -0.0 98,661 + -0.0 98,662 - -0.0 98,662 - -1.5 98,678 + -2.2 98,678 + -0.0 98,678 + -2.5 98,679 - -0.0 98,692 + -1.7 98,774 - -0.0 98,797 + -2.6 98,797 + -0.0 98,797 + -2.9 98,823 + -0.0 98,824 - -0.0 98,932 - -1.4 98,978 + -0.0 98,979 - -2.3 98,979 - -2.1 99,090 + Pf1N1B4_5365 0.14 -2.0 99,090 + Pf1N1B4_5365 0.14 -4.4 99,090 + Pf1N1B4_5365 0.14 -0.0 99,090 + Pf1N1B4_5365 0.14 -0.0 99,091 - Pf1N1B4_5365 0.14 -0.0 99,160 + Pf1N1B4_5365 0.31 -0.0 99,160 + Pf1N1B4_5365 0.31 -5.4 99,160 + -2.0 99,161 - Pf1N1B4_5365 0.31 -0.0 99,482 + -2.1 99,482 + -5.0 99,483 - -3.7 99,583 + -0.0 99,583 + -0.0 99,584 - -1.5 99,584 - -2.5 99,746 + Pf1N1B4_5366 0.71 -0.0 99,895 + -0.0 99,896 - -0.0 99,896 - -2.8 99,896 - -0.0 99,896 - -0.0 100,062 + -1.6 100,077 + -0.0 100,077 + -0.0 100,077 + -0.0 100,174 + Pf1N1B4_5367 0.16 -0.0 100,249 + Pf1N1B4_5367 0.31 -0.0 100,273 + Pf1N1B4_5367 0.36 -1.9 100,274 - Pf1N1B4_5367 0.37 -0.0 100,274 - Pf1N1B4_5367 0.37 -0.0 100,274 - Pf1N1B4_5367 0.37 -2.3 100,313 + Pf1N1B4_5367 0.45 -0.0 100,313 + Pf1N1B4_5367 0.45 -0.0 100,313 + Pf1N1B4_5367 0.45 -0.0 100,313 + Pf1N1B4_5367 0.45 -1.8 100,313 + Pf1N1B4_5367 0.45 -0.0 100,314 - Pf1N1B4_5367 0.45 -0.0
Or see this region's nucleotide sequence