Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5036

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
5,579,772	-		Pf1N1B4_5034	0.88	-2.3
5,579,875	+				-2.2
5,579,876	-				-2.1
5,579,876	-				+0.1
5,580,044	+				+0.1
5,580,044	+				+0.1
5,580,044	+				+0.1
5,580,045	-				-3.1
5,580,045	-				-3.8
5,580,179	+		Pf1N1B4_5035	0.26	+0.1
5,580,180	-		Pf1N1B4_5035	0.26	+0.1
5,580,180	-				-1.9
5,580,388	+				-2.6
5,580,434	-				-3.8
5,580,434	-				+0.1
5,580,562	-				+0.1
5,580,590	+				-2.1
5,580,590	+				-0.2
5,580,590	+				+0.1
5,580,786	+				+0.1
5,580,786	+		Pf1N1B4_5036	0.68	-4.3
5,580,787	-		Pf1N1B4_5036	0.68	+0.1
5,580,787	-		Pf1N1B4_5036	0.68	-3.3
5,580,787	-				-1.9
5,580,787	-		Pf1N1B4_5036	0.68	+0.1
5,580,787	-		Pf1N1B4_5036	0.68	+0.1
5,580,789	+		Pf1N1B4_5036	0.69	-3.7
5,580,789	+		Pf1N1B4_5036	0.69	-2.3
5,580,789	+		Pf1N1B4_5036	0.69	-2.7
5,580,789	+		Pf1N1B4_5036	0.69	+0.1
5,580,790	-		Pf1N1B4_5036	0.69	+0.1
5,580,790	-		Pf1N1B4_5036	0.69	-2.1
5,580,793	-		Pf1N1B4_5036	0.70	+0.1
5,580,861	+				+0.1
5,580,861	+				-2.0
5,580,861	+				-2.3
5,580,897	-				-0.9
5,581,191	-				-2.7
5,581,191	-				+0.1
5,581,191	-				+0.1
5,581,195	-				-2.3
5,581,278	-				+0.1
5,581,786	+		Pf1N1B4_5037	0.13	+0.1