Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4877 and Pf1N1B4_4878 are separated by 310 nucleotides Pf1N1B4_4878 and Pf1N1B4_4879 are separated by 102 nucleotides Pf1N1B4_4879 and Pf1N1B4_4880 overlap by 14 nucleotides Pf1N1B4_4880 and Pf1N1B4_4881 are separated by 25 nucleotides
Pf1N1B4_4877 - hypothetical protein, at 5,396,155 to 5,396,277
_4877
Pf1N1B4_4878 - NADH:flavin oxidoreductase/NADH oxidase, at 5,396,588 to 5,397,040
_4878
Pf1N1B4_4879 - Chromosome segregation ATPases, at 5,397,143 to 5,397,517
_4879
Pf1N1B4_4880 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 5,397,504 to 5,398,472
_4880
Pf1N1B4_4881 - Hypothetical transcriptional regulator YqhC, at 5,398,498 to 5,399,409
_4881
Position (kb) 5397
5398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5396.182 kb on + strand at 5396.358 kb on - strand at 5396.891 kb on - strand, within Pf1N1B4_4878 at 5396.923 kb on + strand at 5396.924 kb on - strand, within Pf1N1B4_4878 at 5397.288 kb on + strand, within Pf1N1B4_4879 at 5397.288 kb on + strand, within Pf1N1B4_4879 at 5397.288 kb on + strand, within Pf1N1B4_4879 at 5397.289 kb on - strand at 5397.289 kb on - strand, within Pf1N1B4_4879 at 5397.440 kb on - strand at 5397.443 kb on + strand, within Pf1N1B4_4879 at 5397.631 kb on + strand, within Pf1N1B4_4880 at 5397.856 kb on + strand at 5397.926 kb on + strand at 5397.927 kb on - strand at 5397.927 kb on - strand, within Pf1N1B4_4880 at 5397.981 kb on - strand at 5398.231 kb on + strand, within Pf1N1B4_4880 at 5398.266 kb on + strand, within Pf1N1B4_4880 at 5398.267 kb on - strand, within Pf1N1B4_4880 at 5398.370 kb on + strand, within Pf1N1B4_4880 at 5398.371 kb on - strand, within Pf1N1B4_4880 at 5398.371 kb on - strand, within Pf1N1B4_4880 at 5398.468 kb on + strand at 5398.468 kb on + strand at 5398.468 kb on + strand at 5398.470 kb on + strand at 5398.470 kb on + strand at 5398.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 5,396,182 + +0.0 5,396,358 - +0.0 5,396,891 - Pf1N1B4_4878 0.67 +0.0 5,396,923 + -1.2 5,396,924 - Pf1N1B4_4878 0.74 -2.4 5,397,288 + Pf1N1B4_4879 0.39 -3.5 5,397,288 + Pf1N1B4_4879 0.39 -3.0 5,397,288 + Pf1N1B4_4879 0.39 +0.0 5,397,289 - -2.3 5,397,289 - Pf1N1B4_4879 0.39 -1.9 5,397,440 - -2.0 5,397,443 + Pf1N1B4_4879 0.80 -3.7 5,397,631 + Pf1N1B4_4880 0.13 +0.0 5,397,856 + +0.0 5,397,926 + +0.0 5,397,927 - +0.0 5,397,927 - Pf1N1B4_4880 0.44 -1.4 5,397,981 - +0.0 5,398,231 + Pf1N1B4_4880 0.75 +0.0 5,398,266 + Pf1N1B4_4880 0.79 +0.0 5,398,267 - Pf1N1B4_4880 0.79 +0.0 5,398,370 + Pf1N1B4_4880 0.89 -3.5 5,398,371 - Pf1N1B4_4880 0.89 +0.0 5,398,371 - Pf1N1B4_4880 0.89 +0.0 5,398,468 + +0.0 5,398,468 + +0.0 5,398,468 + -1.9 5,398,470 + +0.0 5,398,470 + +0.0 5,398,471 - +0.0
Or see this region's nucleotide sequence