Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4802 and Pf1N1B4_4803 are separated by 402 nucleotides Pf1N1B4_4803 and Pf1N1B4_4804 are separated by 92 nucleotides Pf1N1B4_4804 and Pf1N1B4_4805 are separated by 10 nucleotides
Pf1N1B4_4802 - polysaccharide deacetylase, at 5,305,011 to 5,305,859
_4802
Pf1N1B4_4803 - ABC-type polar amino acid transport system protein, substrate-binding protein, at 5,306,262 to 5,307,047
_4803
Pf1N1B4_4804 - ABC-type polar amino acid transport system protein, ATP-binding protein, at 5,307,140 to 5,307,904
_4804
Pf1N1B4_4805 - ABC transporter permease protein, at 5,307,915 to 5,308,793
_4805
Position (kb) 5306
5307
5308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5305.291 kb on + strand, within Pf1N1B4_4802 at 5305.291 kb on + strand, within Pf1N1B4_4802 at 5305.361 kb on - strand at 5305.394 kb on - strand, within Pf1N1B4_4802 at 5305.735 kb on + strand at 5305.874 kb on - strand at 5305.877 kb on + strand at 5305.877 kb on + strand at 5305.878 kb on - strand at 5305.878 kb on - strand at 5305.879 kb on + strand at 5305.880 kb on - strand at 5305.883 kb on + strand at 5306.025 kb on - strand at 5306.088 kb on - strand at 5306.208 kb on + strand at 5306.209 kb on - strand at 5306.209 kb on - strand at 5306.209 kb on - strand at 5306.209 kb on - strand at 5306.209 kb on - strand at 5306.209 kb on - strand at 5306.263 kb on + strand at 5306.264 kb on - strand at 5306.264 kb on - strand at 5306.264 kb on - strand at 5306.264 kb on - strand at 5306.264 kb on - strand at 5306.264 kb on - strand at 5306.455 kb on + strand, within Pf1N1B4_4803 at 5306.456 kb on - strand, within Pf1N1B4_4803 at 5306.456 kb on - strand, within Pf1N1B4_4803 at 5306.456 kb on - strand, within Pf1N1B4_4803 at 5306.744 kb on - strand, within Pf1N1B4_4803 at 5307.061 kb on - strand at 5307.075 kb on + strand at 5307.076 kb on - strand at 5307.076 kb on - strand at 5307.076 kb on - strand at 5307.110 kb on + strand at 5307.111 kb on - strand at 5307.191 kb on + strand at 5307.191 kb on + strand at 5307.192 kb on - strand at 5307.192 kb on - strand at 5307.194 kb on + strand at 5307.194 kb on + strand at 5307.868 kb on - strand at 5307.868 kb on - strand at 5307.868 kb on - strand at 5307.868 kb on - strand at 5308.045 kb on + strand, within Pf1N1B4_4805
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 5,305,291 + Pf1N1B4_4802 0.33 -1.4 5,305,291 + Pf1N1B4_4802 0.33 +0.0 5,305,361 - -2.5 5,305,394 - Pf1N1B4_4802 0.45 +1.0 5,305,735 + +0.0 5,305,874 - -2.5 5,305,877 + -1.5 5,305,877 + -3.6 5,305,878 - -2.2 5,305,878 - -2.4 5,305,879 + -1.5 5,305,880 - +0.0 5,305,883 + +0.0 5,306,025 - -2.2 5,306,088 - +0.0 5,306,208 + +0.0 5,306,209 - +0.0 5,306,209 - +0.0 5,306,209 - -3.2 5,306,209 - +0.0 5,306,209 - +0.0 5,306,209 - -2.3 5,306,263 + -1.2 5,306,264 - -2.4 5,306,264 - +0.0 5,306,264 - +0.0 5,306,264 - +0.0 5,306,264 - -1.2 5,306,264 - -3.5 5,306,455 + Pf1N1B4_4803 0.25 -3.3 5,306,456 - Pf1N1B4_4803 0.25 -2.3 5,306,456 - Pf1N1B4_4803 0.25 -3.7 5,306,456 - Pf1N1B4_4803 0.25 -2.4 5,306,744 - Pf1N1B4_4803 0.61 -2.6 5,307,061 - -2.9 5,307,075 + +0.0 5,307,076 - +0.0 5,307,076 - +0.0 5,307,076 - -3.1 5,307,110 + +0.0 5,307,111 - +0.0 5,307,191 + -3.5 5,307,191 + -3.0 5,307,192 - +0.0 5,307,192 - +0.0 5,307,194 + -4.5 5,307,194 + -2.2 5,307,868 - +0.0 5,307,868 - -2.5 5,307,868 - +0.0 5,307,868 - +0.0 5,308,045 + Pf1N1B4_4805 0.15 -2.0
Or see this region's nucleotide sequence