Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_479

Experiment: Nitrate reduction, replicate C t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_478 and Pf1N1B4_479 are separated by 249 nucleotidesPf1N1B4_479 and Pf1N1B4_480 overlap by 20 nucleotides Pf1N1B4_478 - Transglutaminase-like enzymes, putative cysteine proteases, at 569,762 to 570,421 _478 Pf1N1B4_479 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,671 to 570,949 _479 Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119 _480 Position (kb) 570 571Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 569.754 kb on - strandat 569.901 kb on + strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.902 kb on - strand, within Pf1N1B4_478at 569.931 kb on + strand, within Pf1N1B4_478at 569.931 kb on + strand, within Pf1N1B4_478at 569.932 kb on - strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.045 kb on + strand, within Pf1N1B4_478at 570.046 kb on - strandat 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.047 kb on + strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.048 kb on - strand, within Pf1N1B4_478at 570.058 kb on - strandat 570.121 kb on + strand, within Pf1N1B4_478at 570.121 kb on + strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.171 kb on - strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.204 kb on + strand, within Pf1N1B4_478at 570.205 kb on - strand, within Pf1N1B4_478at 570.205 kb on - strand, within Pf1N1B4_478at 570.267 kb on + strand, within Pf1N1B4_478at 570.276 kb on + strand, within Pf1N1B4_478at 570.276 kb on + strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strandat 570.277 kb on - strand, within Pf1N1B4_478at 570.277 kb on - strand, within Pf1N1B4_478at 570.300 kb on + strand, within Pf1N1B4_478at 570.301 kb on - strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.303 kb on + strand, within Pf1N1B4_478at 570.304 kb on - strandat 570.304 kb on - strand, within Pf1N1B4_478at 570.304 kb on - strand, within Pf1N1B4_478at 570.411 kb on + strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.412 kb on - strandat 570.550 kb on - strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.577 kb on + strandat 570.578 kb on - strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.612 kb on + strandat 570.613 kb on - strandat 570.625 kb on + strandat 570.625 kb on + strandat 570.625 kb on + strandat 570.670 kb on + strandat 570.670 kb on + strandat 570.670 kb on + strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.671 kb on - strandat 570.713 kb on + strand, within Pf1N1B4_479at 570.767 kb on + strand, within Pf1N1B4_479at 570.871 kb on + strand, within Pf1N1B4_479at 570.871 kb on + strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 570.899 kb on - strand, within Pf1N1B4_479at 571.221 kb on + strand, within Pf1N1B4_480at 571.354 kb on - strand, within Pf1N1B4_480at 571.515 kb on + strand, within Pf1N1B4_480at 571.516 kb on - strandat 571.516 kb on - strand, within Pf1N1B4_480at 571.566 kb on + strand, within Pf1N1B4_480at 571.566 kb on + strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.567 kb on - strand, within Pf1N1B4_480at 571.583 kb on - strand, within Pf1N1B4_480at 571.646 kb on - strand, within Pf1N1B4_480at 571.651 kb on + strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.652 kb on - strand, within Pf1N1B4_480at 571.714 kb on + strandat 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.714 kb on + strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.715 kb on - strand, within Pf1N1B4_480at 571.949 kb on + strand, within Pf1N1B4_480

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1
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569,754 - -0.0
569,901 + Pf1N1B4_478 0.21 -2.1
569,902 - Pf1N1B4_478 0.21 -0.0
569,902 - Pf1N1B4_478 0.21 -0.0
569,902 - Pf1N1B4_478 0.21 -2.5
569,931 + Pf1N1B4_478 0.26 -0.0
569,931 + Pf1N1B4_478 0.26 -2.0
569,932 - Pf1N1B4_478 0.26 -2.9
570,045 + Pf1N1B4_478 0.43 -0.0
570,045 + Pf1N1B4_478 0.43 -0.0
570,045 + Pf1N1B4_478 0.43 -0.0
570,046 - -2.3
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,047 + Pf1N1B4_478 0.43 -0.0
570,048 - Pf1N1B4_478 0.43 -0.0
570,048 - Pf1N1B4_478 0.43 -2.2
570,048 - Pf1N1B4_478 0.43 -0.0
570,048 - Pf1N1B4_478 0.43 -0.0
570,058 - -5.7
570,121 + Pf1N1B4_478 0.54 -0.0
570,121 + Pf1N1B4_478 0.54 -2.2
570,171 - Pf1N1B4_478 0.62 -1.6
570,171 - Pf1N1B4_478 0.62 -0.0
570,171 - Pf1N1B4_478 0.62 -3.6
570,204 + Pf1N1B4_478 0.67 -0.0
570,204 + Pf1N1B4_478 0.67 -2.9
570,204 + Pf1N1B4_478 0.67 -0.0
570,205 - Pf1N1B4_478 0.67 -0.0
570,205 - Pf1N1B4_478 0.67 -0.0
570,267 + Pf1N1B4_478 0.77 -0.0
570,276 + Pf1N1B4_478 0.78 -2.1
570,276 + Pf1N1B4_478 0.78 -0.0
570,277 - Pf1N1B4_478 0.78 -0.0
570,277 - Pf1N1B4_478 0.78 -0.0
570,277 - Pf1N1B4_478 0.78 -3.1
570,277 - -2.8
570,277 - Pf1N1B4_478 0.78 -2.1
570,277 - Pf1N1B4_478 0.78 -0.9
570,300 + Pf1N1B4_478 0.82 -1.6
570,301 - Pf1N1B4_478 0.82 -0.0
570,303 + Pf1N1B4_478 0.82 -0.0
570,303 + Pf1N1B4_478 0.82 -2.2
570,303 + Pf1N1B4_478 0.82 -0.0
570,304 - -0.0
570,304 - Pf1N1B4_478 0.82 -0.0
570,304 - Pf1N1B4_478 0.82 -0.0
570,411 + -0.0
570,412 - -0.0
570,412 - -2.4
570,412 - -0.0
570,412 - -0.0
570,550 - -1.6
570,577 + -0.0
570,577 + -0.0
570,577 + -0.0
570,577 + -2.6
570,577 + -3.3
570,577 + -0.0
570,577 + -3.1
570,577 + -0.0
570,578 - -2.9
570,612 + -0.0
570,612 + -0.0
570,612 + -0.0
570,612 + -0.0
570,613 - -0.0
570,625 + -0.0
570,625 + -3.6
570,625 + -0.0
570,670 + -0.0
570,670 + -2.4
570,670 + -2.0
570,671 - -0.0
570,671 - -0.0
570,671 - -0.0
570,671 - -3.2
570,713 + Pf1N1B4_479 0.15 -3.2
570,767 + Pf1N1B4_479 0.34 -4.0
570,871 + Pf1N1B4_479 0.72 -3.2
570,871 + Pf1N1B4_479 0.72 -3.1
570,899 - Pf1N1B4_479 0.82 -0.0
570,899 - Pf1N1B4_479 0.82 -0.0
570,899 - Pf1N1B4_479 0.82 -1.5
571,221 + Pf1N1B4_480 0.13 -0.0
571,354 - Pf1N1B4_480 0.19 -0.0
571,515 + Pf1N1B4_480 0.27 -0.0
571,516 - -2.6
571,516 - Pf1N1B4_480 0.27 -0.0
571,566 + Pf1N1B4_480 0.29 -1.4
571,566 + Pf1N1B4_480 0.29 -0.0
571,567 - Pf1N1B4_480 0.29 -0.0
571,567 - Pf1N1B4_480 0.29 -2.7
571,567 - Pf1N1B4_480 0.29 -0.0
571,583 - Pf1N1B4_480 0.30 -0.0
571,646 - Pf1N1B4_480 0.33 -0.0
571,651 + Pf1N1B4_480 0.33 -1.6
571,652 - Pf1N1B4_480 0.33 -0.0
571,652 - Pf1N1B4_480 0.33 -0.0
571,652 - Pf1N1B4_480 0.33 -0.0
571,714 + -2.3
571,714 + Pf1N1B4_480 0.36 -0.0
571,714 + Pf1N1B4_480 0.36 -2.4
571,714 + Pf1N1B4_480 0.36 -1.4
571,714 + Pf1N1B4_480 0.36 -0.0
571,715 - Pf1N1B4_480 0.36 -0.0
571,715 - Pf1N1B4_480 0.36 -0.0
571,715 - Pf1N1B4_480 0.36 -2.3
571,715 - Pf1N1B4_480 0.36 -2.5
571,715 - Pf1N1B4_480 0.36 -0.0
571,715 - Pf1N1B4_480 0.36 -0.0
571,715 - Pf1N1B4_480 0.36 -2.3
571,715 - Pf1N1B4_480 0.36 -2.6
571,715 - Pf1N1B4_480 0.36 -2.5
571,949 + Pf1N1B4_480 0.47 -0.0

Or see this region's nucleotide sequence