Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4568 and Pf1N1B4_4569 are separated by 195 nucleotides Pf1N1B4_4569 and Pf1N1B4_4570 are separated by 35 nucleotides Pf1N1B4_4570 and Pf1N1B4_4571 are separated by 151 nucleotides
Pf1N1B4_4568 - FIG00793915: hypothetical protein, at 5,041,317 to 5,041,805
_4568
Pf1N1B4_4569 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 5,042,001 to 5,042,618
_4569
Pf1N1B4_4570 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 5,042,654 to 5,043,505
_4570
Pf1N1B4_4571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 5,043,657 to 5,044,589
_4571
Position (kb) 5042
5043
5044 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5041.741 kb on + strand, within Pf1N1B4_4568 at 5041.960 kb on - strand at 5042.026 kb on + strand at 5042.027 kb on - strand at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.179 kb on + strand, within Pf1N1B4_4569 at 5042.180 kb on - strand, within Pf1N1B4_4569 at 5042.501 kb on - strand, within Pf1N1B4_4569 at 5042.736 kb on + strand at 5042.952 kb on + strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5043.004 kb on - strand, within Pf1N1B4_4570 at 5043.066 kb on + strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.338 kb on - strand, within Pf1N1B4_4570 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.875 kb on - strand, within Pf1N1B4_4571
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 5,041,741 + Pf1N1B4_4568 0.87 -1.0 5,041,960 - -0.9 5,042,026 + +0.0 5,042,027 - -1.4 5,042,084 + Pf1N1B4_4569 0.13 -2.2 5,042,084 + Pf1N1B4_4569 0.13 -2.1 5,042,179 + Pf1N1B4_4569 0.29 +0.0 5,042,180 - Pf1N1B4_4569 0.29 -3.8 5,042,501 - Pf1N1B4_4569 0.81 -2.7 5,042,736 + +0.0 5,042,952 + Pf1N1B4_4570 0.35 -2.7 5,042,953 - Pf1N1B4_4570 0.35 +0.0 5,042,953 - Pf1N1B4_4570 0.35 +0.0 5,043,004 - Pf1N1B4_4570 0.41 -4.2 5,043,066 + Pf1N1B4_4570 0.48 -2.4 5,043,067 - Pf1N1B4_4570 0.48 +0.0 5,043,067 - Pf1N1B4_4570 0.48 +0.0 5,043,338 - Pf1N1B4_4570 0.80 -3.4 5,043,760 + Pf1N1B4_4571 0.11 +0.0 5,043,760 + Pf1N1B4_4571 0.11 +0.0 5,043,760 + Pf1N1B4_4571 0.11 -3.1 5,043,765 - Pf1N1B4_4571 0.12 +0.0 5,043,765 - Pf1N1B4_4571 0.12 +0.0 5,043,875 - Pf1N1B4_4571 0.23 +0.0
Or see this region's nucleotide sequence