Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_400 and Pf1N1B4_401 are separated by 215 nucleotides Pf1N1B4_401 and Pf1N1B4_402 are separated by 220 nucleotides Pf1N1B4_402 and Pf1N1B4_403 are separated by 462 nucleotides Pf1N1B4_403 and Pf1N1B4_404 are separated by 112 nucleotides
Pf1N1B4_400 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 469,384 to 470,376
_400
Pf1N1B4_401 - GCN5-related N-acetyltransferase (EC 2.3.1.57), at 470,592 to 471,074
_401
Pf1N1B4_402 - metal-dependent phosphohydrolase, at 471,295 to 471,951
_402
Pf1N1B4_403 - FIG00965925: hypothetical protein, at 472,414 to 472,668
_403
Pf1N1B4_404 - ParE toxin protein, at 472,781 to 473,161
_404
Position (kb) 471
472 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 470.324 kb on + strand at 470.324 kb on + strand at 470.324 kb on + strand at 470.324 kb on + strand at 470.325 kb on - strand at 470.332 kb on + strand at 470.332 kb on + strand at 470.333 kb on - strand at 470.418 kb on + strand at 470.419 kb on - strand at 470.420 kb on + strand at 470.421 kb on - strand at 470.436 kb on + strand at 470.447 kb on - strand at 470.448 kb on + strand at 470.450 kb on + strand at 470.523 kb on + strand at 470.523 kb on + strand at 470.523 kb on + strand at 470.523 kb on + strand at 470.523 kb on + strand at 470.558 kb on + strand at 470.559 kb on - strand at 470.559 kb on - strand at 470.680 kb on + strand, within Pf1N1B4_401 at 470.681 kb on - strand, within Pf1N1B4_401 at 470.681 kb on - strand, within Pf1N1B4_401 at 470.815 kb on + strand, within Pf1N1B4_401 at 470.815 kb on + strand, within Pf1N1B4_401 at 470.815 kb on + strand, within Pf1N1B4_401 at 470.815 kb on + strand, within Pf1N1B4_401 at 470.815 kb on + strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.816 kb on - strand, within Pf1N1B4_401 at 470.831 kb on - strand, within Pf1N1B4_401 at 471.107 kb on - strand at 471.107 kb on - strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.110 kb on - strand at 471.110 kb on - strand at 471.110 kb on - strand at 471.110 kb on - strand at 471.155 kb on + strand at 471.155 kb on + strand at 471.155 kb on + strand at 471.155 kb on + strand at 471.155 kb on + strand at 471.155 kb on + strand at 471.156 kb on - strand at 471.156 kb on - strand at 471.156 kb on - strand at 471.156 kb on - strand at 471.161 kb on + strand at 471.161 kb on + strand at 471.181 kb on + strand at 471.181 kb on + strand at 471.181 kb on + strand at 471.182 kb on - strand at 471.217 kb on - strand at 471.363 kb on + strand, within Pf1N1B4_402 at 471.364 kb on - strand, within Pf1N1B4_402 at 471.564 kb on - strand, within Pf1N1B4_402 at 471.591 kb on + strand, within Pf1N1B4_402 at 471.724 kb on + strand at 471.724 kb on + strand, within Pf1N1B4_402 at 471.724 kb on + strand, within Pf1N1B4_402 at 471.724 kb on + strand, within Pf1N1B4_402 at 471.724 kb on + strand, within Pf1N1B4_402 at 471.725 kb on - strand, within Pf1N1B4_402 at 471.725 kb on - strand, within Pf1N1B4_402 at 471.725 kb on - strand, within Pf1N1B4_402 at 471.725 kb on - strand, within Pf1N1B4_402 at 471.725 kb on - strand, within Pf1N1B4_402 at 471.754 kb on + strand, within Pf1N1B4_402 at 471.754 kb on + strand, within Pf1N1B4_402 at 471.754 kb on + strand, within Pf1N1B4_402 at 471.755 kb on - strand at 471.755 kb on - strand, within Pf1N1B4_402 at 471.755 kb on - strand, within Pf1N1B4_402 at 471.755 kb on - strand, within Pf1N1B4_402 at 471.790 kb on + strand, within Pf1N1B4_402 at 471.949 kb on + strand at 471.949 kb on + strand at 472.025 kb on + strand at 472.260 kb on + strand at 472.260 kb on + strand at 472.260 kb on + strand at 472.260 kb on + strand at 472.261 kb on - strand at 472.261 kb on - strand at 472.385 kb on + strand at 472.385 kb on + strand at 472.385 kb on + strand at 472.385 kb on + strand at 472.386 kb on - strand at 472.386 kb on - strand at 472.410 kb on - strand at 472.425 kb on + strand at 472.460 kb on + strand, within Pf1N1B4_403 at 472.461 kb on - strand, within Pf1N1B4_403 at 472.461 kb on - strand, within Pf1N1B4_403 at 472.461 kb on - strand, within Pf1N1B4_403 at 472.667 kb on - strand at 472.674 kb on + strand at 472.762 kb on + strand at 472.805 kb on + strand at 472.805 kb on + strand at 472.805 kb on + strand at 472.806 kb on - strand at 472.806 kb on - strand at 472.806 kb on - strand at 472.850 kb on + strand, within Pf1N1B4_404 at 472.850 kb on + strand, within Pf1N1B4_404 at 472.850 kb on + strand, within Pf1N1B4_404 at 472.851 kb on - strand, within Pf1N1B4_404
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 470,324 + -0.0 470,324 + -2.3 470,324 + -0.0 470,324 + -2.1 470,325 - -0.0 470,332 + -0.0 470,332 + -0.0 470,333 - -0.0 470,418 + -0.0 470,419 - -1.6 470,420 + -2.3 470,421 - -0.0 470,436 + -0.0 470,447 - -0.0 470,448 + -2.0 470,450 + -2.5 470,523 + -0.0 470,523 + -0.0 470,523 + -0.0 470,523 + -0.0 470,523 + -3.0 470,558 + -0.0 470,559 - -0.0 470,559 - -0.0 470,680 + Pf1N1B4_401 0.18 -0.0 470,681 - Pf1N1B4_401 0.18 -0.0 470,681 - Pf1N1B4_401 0.18 -0.0 470,815 + Pf1N1B4_401 0.46 -1.7 470,815 + Pf1N1B4_401 0.46 -2.0 470,815 + Pf1N1B4_401 0.46 -2.7 470,815 + Pf1N1B4_401 0.46 -1.0 470,815 + Pf1N1B4_401 0.46 -0.0 470,816 - Pf1N1B4_401 0.46 -0.0 470,816 - Pf1N1B4_401 0.46 -0.0 470,816 - Pf1N1B4_401 0.46 -2.7 470,816 - Pf1N1B4_401 0.46 -3.2 470,816 - Pf1N1B4_401 0.46 -2.7 470,816 - Pf1N1B4_401 0.46 -2.8 470,831 - Pf1N1B4_401 0.49 -0.0 471,107 - -0.0 471,107 - -2.3 471,109 + -1.5 471,109 + -0.0 471,109 + -0.0 471,109 + -0.0 471,109 + -0.0 471,109 + -2.7 471,109 + -0.0 471,109 + -0.0 471,109 + -0.0 471,109 + -0.0 471,110 - -1.9 471,110 - -0.0 471,110 - -2.0 471,110 - -1.5 471,155 + -0.0 471,155 + -0.0 471,155 + -0.0 471,155 + -0.0 471,155 + -0.0 471,155 + -0.0 471,156 - -0.0 471,156 - -0.0 471,156 - -0.0 471,156 - -0.0 471,161 + -0.0 471,161 + -0.0 471,181 + -0.0 471,181 + -0.0 471,181 + -0.0 471,182 - -0.0 471,217 - -0.0 471,363 + Pf1N1B4_402 0.10 -0.0 471,364 - Pf1N1B4_402 0.11 -2.3 471,564 - Pf1N1B4_402 0.41 -0.0 471,591 + Pf1N1B4_402 0.45 -0.0 471,724 + -4.8 471,724 + Pf1N1B4_402 0.65 -0.0 471,724 + Pf1N1B4_402 0.65 -1.8 471,724 + Pf1N1B4_402 0.65 -1.4 471,724 + Pf1N1B4_402 0.65 -0.0 471,725 - Pf1N1B4_402 0.65 -0.0 471,725 - Pf1N1B4_402 0.65 -0.0 471,725 - Pf1N1B4_402 0.65 -2.2 471,725 - Pf1N1B4_402 0.65 -0.0 471,725 - Pf1N1B4_402 0.65 -0.0 471,754 + Pf1N1B4_402 0.70 -2.0 471,754 + Pf1N1B4_402 0.70 -0.0 471,754 + Pf1N1B4_402 0.70 -0.0 471,755 - -2.1 471,755 - Pf1N1B4_402 0.70 -0.0 471,755 - Pf1N1B4_402 0.70 -0.9 471,755 - Pf1N1B4_402 0.70 -0.0 471,790 + Pf1N1B4_402 0.75 -1.6 471,949 + +1.0 471,949 + -0.0 472,025 + -0.0 472,260 + -0.0 472,260 + -0.0 472,260 + -1.0 472,260 + -1.2 472,261 - -0.0 472,261 - -2.2 472,385 + -0.0 472,385 + -0.0 472,385 + -2.7 472,385 + -0.0 472,386 - -3.6 472,386 - -2.2 472,410 - -0.0 472,425 + -0.0 472,460 + Pf1N1B4_403 0.18 -0.0 472,461 - Pf1N1B4_403 0.18 -0.0 472,461 - Pf1N1B4_403 0.18 -0.0 472,461 - Pf1N1B4_403 0.18 -0.0 472,667 - -0.0 472,674 + -0.0 472,762 + -0.0 472,805 + -2.3 472,805 + -0.0 472,805 + -0.6 472,806 - -0.0 472,806 - -2.8 472,806 - -2.6 472,850 + Pf1N1B4_404 0.18 -0.0 472,850 + Pf1N1B4_404 0.18 -3.5 472,850 + Pf1N1B4_404 0.18 -0.0 472,851 - Pf1N1B4_404 0.18 -0.0
Or see this region's nucleotide sequence