Experiment: Nitrate reduction, replicate C t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3772 and Pf1N1B4_3773 are separated by 102 nucleotides Pf1N1B4_3773 and Pf1N1B4_3774 are separated by 77 nucleotides Pf1N1B4_3774 and Pf1N1B4_3775 are separated by 75 nucleotides Pf1N1B4_3775 and Pf1N1B4_3776 are separated by 131 nucleotides
Pf1N1B4_3772 - Glutaredoxin, at 4,183,047 to 4,183,418
_3772
Pf1N1B4_3773 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,183,521 to 4,184,066
_3773
Pf1N1B4_3774 - Smr domain protein, at 4,184,144 to 4,184,701
_3774
Pf1N1B4_3775 - FIG00956876: hypothetical protein, at 4,184,777 to 4,185,097
_3775
Pf1N1B4_3776 - Isochorismatase (EC 3.3.2.1), at 4,185,229 to 4,185,819
_3776
Position (kb)
4184
4185 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4183.282 kb on + strand, within Pf1N1B4_3772 at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.421 kb on + strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.422 kb on - strand at 4183.423 kb on + strand at 4183.423 kb on + strand at 4183.423 kb on + strand at 4183.458 kb on - strand at 4183.459 kb on - strand at 4183.522 kb on + strand at 4184.187 kb on + strand at 4184.331 kb on - strand, within Pf1N1B4_3774 at 4184.331 kb on - strand, within Pf1N1B4_3774 at 4184.872 kb on - strand, within Pf1N1B4_3775 at 4184.872 kb on - strand, within Pf1N1B4_3775 at 4184.872 kb on - strand, within Pf1N1B4_3775
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1 remove 4,183,282 + Pf1N1B4_3772 0.63 -0.0 4,183,421 + -1.0 4,183,421 + -0.0 4,183,421 + -3.0 4,183,421 + -0.0 4,183,421 + -0.0 4,183,421 + -2.6 4,183,421 + -0.2 4,183,421 + -3.6 4,183,421 + -3.3 4,183,421 + -0.0 4,183,421 + -0.0 4,183,422 - -2.3 4,183,422 - -0.0 4,183,422 - -2.3 4,183,422 - -0.0 4,183,422 - -0.0 4,183,422 - -2.4 4,183,422 - -3.1 4,183,422 - -0.0 4,183,423 + -3.8 4,183,423 + -0.0 4,183,423 + -0.0 4,183,458 - -0.0 4,183,459 - -0.0 4,183,522 + -4.4 4,184,187 + -0.0 4,184,331 - Pf1N1B4_3774 0.34 -0.0 4,184,331 - Pf1N1B4_3774 0.34 -2.6 4,184,872 - Pf1N1B4_3775 0.30 -0.0 4,184,872 - Pf1N1B4_3775 0.30 -2.8 4,184,872 - Pf1N1B4_3775 0.30 -3.7
Or see this region's nucleotide sequence