Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2828

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
3,171,626	+		Pf1N1B4_2826	0.55	-2.0
3,171,752	+		Pf1N1B4_2826	0.64	-0.8
3,171,881	+		Pf1N1B4_2826	0.74	+0.0
3,171,926	+		Pf1N1B4_2826	0.78	-2.5
3,171,926	+		Pf1N1B4_2826	0.78	-2.6
3,171,976	-		Pf1N1B4_2826	0.82	+0.0
3,172,022	+		Pf1N1B4_2826	0.85	-4.0
3,172,022	+		Pf1N1B4_2826	0.85	+0.0
3,172,022	+		Pf1N1B4_2826	0.85	-1.6
3,172,022	+		Pf1N1B4_2826	0.85	+0.0
3,172,022	+		Pf1N1B4_2826	0.85	+0.0
3,172,022	+		Pf1N1B4_2826	0.85	+0.0
3,172,023	-		Pf1N1B4_2826	0.85	+0.0
3,172,023	-		Pf1N1B4_2826	0.85	-2.7
3,172,023	-				-3.8
3,172,023	-		Pf1N1B4_2826	0.85	+0.0
3,172,023	-		Pf1N1B4_2826	0.85	+0.0
3,172,023	-		Pf1N1B4_2826	0.85	+0.0
3,172,023	-		Pf1N1B4_2826	0.85	-2.1
3,172,117	+				+0.0
3,172,117	+				-2.4
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				-2.1
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,117	+				+0.0
3,172,118	-				-3.0
3,172,118	-				-4.1
3,172,118	-				+0.0
3,172,118	-				+0.0
3,172,118	-				+0.0
3,172,203	+				+0.0
3,172,203	+				+0.0
3,172,204	-				+0.0
3,172,204	-				+0.0
3,172,204	-				+0.0
3,172,221	+				+0.0
3,172,253	+				+0.0
3,172,253	+				-2.7
3,172,279	+				+0.0
3,172,280	-				+0.0
3,172,280	-				-2.3
3,172,289	+				-1.6
3,172,290	-				+0.0
3,172,296	+		Pf1N1B4_2827	0.11	+0.0
3,172,297	-		Pf1N1B4_2827	0.12	+0.0
3,172,297	-		Pf1N1B4_2827	0.12	+0.0
3,172,315	+		Pf1N1B4_2827	0.22	+0.0
3,172,316	-		Pf1N1B4_2827	0.23	-2.3
3,172,403	+		Pf1N1B4_2827	0.73	-2.4
3,172,449	+				-3.0
3,172,450	-				+0.0
3,172,466	-				+0.0
3,172,466	-				+0.0
3,172,483	+				-1.3
3,172,483	+				-1.7
3,172,484	-				-1.8
3,172,484	-				-3.3
3,172,484	-				+0.0
3,172,536	+				-1.0
3,172,536	+				+0.0
3,172,536	+				+0.0
3,172,537	-				-3.7
3,172,537	-				+0.0
3,172,537	-				+0.0
3,172,537	-				+0.0
3,172,537	-				-3.0
3,172,537	-				-0.5
3,172,537	-				+0.0
3,172,537	-				-2.0
3,172,537	-				-2.5
3,172,537	-				-1.7
3,172,572	+				-2.8
3,172,572	+				-1.7
3,172,573	-				-2.0
3,172,573	-				+0.0
3,172,573	-				+0.0
3,172,743	-		Pf1N1B4_2828	0.22	+0.0
3,172,743	-		Pf1N1B4_2828	0.22	+0.0
3,172,847	+		Pf1N1B4_2828	0.39	-3.5
3,172,847	+		Pf1N1B4_2828	0.39	+0.0
3,172,848	-		Pf1N1B4_2828	0.39	+0.0
3,172,936	+		Pf1N1B4_2828	0.53	-2.5
3,173,209	+				+1.0
3,173,210	-				+0.0
3,173,210	-				-2.2
3,173,213	+				+0.0
3,173,214	-				-3.0
3,173,214	-				+0.0
3,173,214	-				+0.0
3,173,242	-				+0.0
3,173,242	-				+0.0
3,173,263	+				-2.3
3,173,263	+				+0.0
3,173,266	+				+0.0
3,173,266	+				-2.7
3,173,266	+				-3.2
3,173,266	+				+0.0
3,173,266	+				+0.0
3,173,266	+				+0.0
3,173,266	+				+0.0
3,173,266	+				-1.3
3,173,266	+				+0.0
3,173,267	-				-2.0
3,173,267	-				-1.3
3,173,267	-				+0.0
3,173,323	-				-2.5
3,173,329	-				-3.7
3,173,382	+				+0.0
3,173,383	-				+0.0
3,173,594	+		Pf1N1B4_2829	0.21	-1.3
3,173,594	+		Pf1N1B4_2829	0.21	+0.0
3,173,594	+		Pf1N1B4_2829	0.21	-2.3
3,173,594	+		Pf1N1B4_2829	0.21	+0.0
3,173,594	+		Pf1N1B4_2829	0.21	+0.0
3,173,595	-		Pf1N1B4_2829	0.21	-1.3
3,173,595	-		Pf1N1B4_2829	0.21	+0.0
3,173,595	-		Pf1N1B4_2829	0.21	+0.0
3,173,595	-		Pf1N1B4_2829	0.21	-1.3
3,173,595	-		Pf1N1B4_2829	0.21	-1.4
3,173,595	-		Pf1N1B4_2829	0.21	+0.0
3,173,595	-		Pf1N1B4_2829	0.21	+0.0
3,173,595	-		Pf1N1B4_2829	0.21	-4.0
3,173,953	+		Pf1N1B4_2829	0.53	-2.2
3,173,953	+		Pf1N1B4_2829	0.53	-2.2
3,173,954	-		Pf1N1B4_2829	0.53	-2.5
3,173,954	-		Pf1N1B4_2829	0.53	+0.0
3,173,954	-		Pf1N1B4_2829	0.53	-3.1
3,173,954	-		Pf1N1B4_2829	0.53	-2.7
3,174,076	-		Pf1N1B4_2829	0.65	+0.0
3,174,076	-		Pf1N1B4_2829	0.65	-2.9
3,174,077	+		Pf1N1B4_2829	0.65	+0.0
3,174,077	+		Pf1N1B4_2829	0.65	-3.6
3,174,077	+		Pf1N1B4_2829	0.65	+0.0
3,174,077	+		Pf1N1B4_2829	0.65	+0.0
3,174,078	-		Pf1N1B4_2829	0.65	-3.7
3,174,078	-		Pf1N1B4_2829	0.65	+0.0
3,174,078	-		Pf1N1B4_2829	0.65	+0.0
3,174,078	-		Pf1N1B4_2829	0.65	-1.9
3,174,078	-		Pf1N1B4_2829	0.65	+0.0
3,174,081	+		Pf1N1B4_2829	0.65	-2.4
3,174,081	+		Pf1N1B4_2829	0.65	+0.0
3,174,082	-		Pf1N1B4_2829	0.65	+0.0
3,174,082	-		Pf1N1B4_2829	0.65	+0.0
3,174,082	-		Pf1N1B4_2829	0.65	-0.9
3,174,082	-		Pf1N1B4_2829	0.65	+0.0
3,174,082	-		Pf1N1B4_2829	0.65	+0.0
3,174,082	-		Pf1N1B4_2829	0.65	-1.3
3,174,203	+		Pf1N1B4_2829	0.76	-2.6
3,174,203	+		Pf1N1B4_2829	0.76	-2.5
3,174,204	-		Pf1N1B4_2829	0.76	-2.4
3,174,204	-		Pf1N1B4_2829	0.76	-2.0
3,174,204	-		Pf1N1B4_2829	0.76	+0.0
3,174,204	-		Pf1N1B4_2829	0.76	+0.0
3,174,207	+		Pf1N1B4_2829	0.76	-2.7
3,174,207	+		Pf1N1B4_2829	0.76	-2.2
3,174,207	+		Pf1N1B4_2829	0.76	+0.0
3,174,207	+		Pf1N1B4_2829	0.76	+0.0
3,174,207	+				-3.7
3,174,208	-		Pf1N1B4_2829	0.77	-2.7
3,174,208	-				-1.8
3,174,216	+		Pf1N1B4_2829	0.77	+0.0
3,174,216	+		Pf1N1B4_2829	0.77	+0.0
3,174,217	-		Pf1N1B4_2829	0.77	-2.8
3,174,222	+		Pf1N1B4_2829	0.78	+0.0
3,174,223	-		Pf1N1B4_2829	0.78	-1.0