Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2791

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
3,136,160	+		Pf1N1B4_2790	0.57	+0.0
3,136,160	+		Pf1N1B4_2790	0.57	-2.2
3,136,160	+		Pf1N1B4_2790	0.57	+0.0
3,136,160	+		Pf1N1B4_2790	0.57	+0.0
3,136,160	+		Pf1N1B4_2790	0.57	+0.0
3,136,160	+		Pf1N1B4_2790	0.57	-2.4
3,136,160	+		Pf1N1B4_2790	0.57	+0.0
3,136,160	+		Pf1N1B4_2790	0.57	-3.9
3,136,161	-		Pf1N1B4_2790	0.57	+0.5
3,136,161	-		Pf1N1B4_2790	0.57	+0.0
3,136,161	-		Pf1N1B4_2790	0.57	-2.6
3,136,161	-		Pf1N1B4_2790	0.57	+0.0
3,136,161	-				-2.8
3,136,170	-		Pf1N1B4_2790	0.57	+0.0
3,136,170	-		Pf1N1B4_2790	0.57	-1.3
3,136,215	+		Pf1N1B4_2790	0.60	-0.9
3,136,215	+		Pf1N1B4_2790	0.60	-2.4
3,136,215	+		Pf1N1B4_2790	0.60	+0.0
3,136,219	+		Pf1N1B4_2790	0.60	+0.0
3,136,219	+		Pf1N1B4_2790	0.60	-1.5
3,136,219	+		Pf1N1B4_2790	0.60	+0.0
3,136,219	+		Pf1N1B4_2790	0.60	+0.0
3,136,219	+		Pf1N1B4_2790	0.60	-2.1
3,136,220	-		Pf1N1B4_2790	0.60	+0.0
3,136,220	-		Pf1N1B4_2790	0.60	+0.0
3,136,302	+		Pf1N1B4_2790	0.64	+0.0
3,136,302	+		Pf1N1B4_2790	0.64	+0.0
3,136,398	+		Pf1N1B4_2790	0.70	+0.0
3,136,398	+		Pf1N1B4_2790	0.70	-1.4
3,136,398	+		Pf1N1B4_2790	0.70	-3.2
3,136,628	+		Pf1N1B4_2790	0.82	+0.0
3,136,628	+		Pf1N1B4_2790	0.82	+0.0
3,136,629	-		Pf1N1B4_2790	0.82	+0.0
3,136,629	-		Pf1N1B4_2790	0.82	+0.0
3,136,629	-		Pf1N1B4_2790	0.82	-2.0
3,136,650	+		Pf1N1B4_2790	0.83	+0.0
3,136,650	+		Pf1N1B4_2790	0.83	+0.0
3,136,650	+		Pf1N1B4_2790	0.83	+0.0
3,136,650	+		Pf1N1B4_2790	0.83	+0.0
3,136,650	+		Pf1N1B4_2790	0.83	-2.5
3,136,650	+		Pf1N1B4_2790	0.83	+0.0
3,136,650	+		Pf1N1B4_2790	0.83	-1.8
3,136,650	+		Pf1N1B4_2790	0.83	-2.2
3,136,651	-		Pf1N1B4_2790	0.83	+0.0
3,136,651	-		Pf1N1B4_2790	0.83	-4.0
3,136,763	+		Pf1N1B4_2790	0.90	-3.2
3,136,763	+		Pf1N1B4_2790	0.90	+0.0
3,136,763	+		Pf1N1B4_2790	0.90	+0.0
3,136,764	-		Pf1N1B4_2790	0.90	-1.4
3,137,062	+				+0.0
3,137,062	+				-2.3
3,137,063	-				+0.0
3,137,077	-				+0.0
3,137,078	+				+0.0
3,137,078	+				-2.3
3,137,079	-				-1.5
3,137,142	+				+0.0
3,137,142	+				-2.2
3,137,142	+				-2.3
3,137,142	+				+0.0
3,137,142	+				-1.3
3,137,143	-				+0.0
3,137,143	-				-2.3
3,137,172	+		Pf1N1B4_2791	0.12	+0.0
3,137,173	-		Pf1N1B4_2791	0.12	+0.0
3,137,243	+		Pf1N1B4_2791	0.26	+0.0
3,137,529	+		Pf1N1B4_2791	0.85	-3.3
3,137,529	+		Pf1N1B4_2791	0.85	-3.3
3,137,529	+		Pf1N1B4_2791	0.85	-2.6
3,137,742	+				+0.0
3,137,742	+				+0.0
3,137,742	+				+0.0
3,137,742	+				-3.2
3,137,742	+				+0.0
3,137,743	-				-1.6
3,137,743	-				+0.0
3,137,743	-				+0.0
3,137,769	+				-3.1
3,137,769	+				-1.6
3,137,769	+				+0.0
3,137,769	+				+0.0
3,137,769	+				+0.0
3,137,769	+				+0.0
3,137,770	-				+0.0
3,137,770	-				-2.2
3,137,770	-				-1.6
3,137,770	-				+0.0
3,137,770	-				-1.8
3,137,829	+				-1.3
3,137,829	+				-2.8
3,137,829	+				+0.0
3,137,829	+				-2.1
3,137,830	-				+0.0
3,137,830	-				+0.0
3,137,830	-				-2.8
3,137,887	-		Pf1N1B4_2792	0.28	-1.3
3,137,947	+		Pf1N1B4_2792	0.48	-0.9
3,137,948	-		Pf1N1B4_2792	0.48	+0.0
3,137,948	-		Pf1N1B4_2792	0.48	+0.0
3,137,948	-		Pf1N1B4_2792	0.48	+0.0
3,137,948	-		Pf1N1B4_2792	0.48	+0.0
3,138,023	+		Pf1N1B4_2792	0.73	+0.0
3,138,023	+		Pf1N1B4_2792	0.73	-2.2
3,138,023	+		Pf1N1B4_2792	0.73	+0.0
3,138,023	+		Pf1N1B4_2792	0.73	+0.0
3,138,023	+		Pf1N1B4_2792	0.73	-3.5
3,138,023	+		Pf1N1B4_2792	0.73	+0.0
3,138,076	+				+0.0
3,138,142	-				+0.0
3,138,242	+				+0.0
3,138,243	-				+0.0
3,138,243	-				+0.0