Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2743

Experiment: Nitrate reduction, replicate C t1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2742 and Pf1N1B4_2743 overlap by 1 nucleotidesPf1N1B4_2743 and Pf1N1B4_2744 are separated by 235 nucleotides Pf1N1B4_2742 - putative exported protein, at 3,080,542 to 3,081,501 _2742 Pf1N1B4_2743 - YpfJ protein, zinc metalloprotease superfamily, at 3,081,501 to 3,082,394 _2743 Pf1N1B4_2744 - Transcriptional regulator, IclR family, at 3,082,630 to 3,083,406 _2744 Position (kb) 3081 3082 3083Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3080.580 kb on + strandat 3080.581 kb on - strandat 3080.727 kb on + strand, within Pf1N1B4_2742at 3080.770 kb on + strand, within Pf1N1B4_2742at 3080.771 kb on - strand, within Pf1N1B4_2742at 3080.771 kb on - strand, within Pf1N1B4_2742at 3080.771 kb on - strand, within Pf1N1B4_2742at 3080.771 kb on - strand, within Pf1N1B4_2742at 3080.774 kb on + strand, within Pf1N1B4_2742at 3080.774 kb on + strand, within Pf1N1B4_2742at 3080.774 kb on + strand, within Pf1N1B4_2742at 3080.774 kb on + strand, within Pf1N1B4_2742at 3080.775 kb on - strand, within Pf1N1B4_2742at 3080.775 kb on - strand, within Pf1N1B4_2742at 3080.775 kb on - strand, within Pf1N1B4_2742at 3080.775 kb on - strand, within Pf1N1B4_2742at 3080.795 kb on + strand, within Pf1N1B4_2742at 3080.795 kb on + strand, within Pf1N1B4_2742at 3080.795 kb on + strand, within Pf1N1B4_2742at 3080.834 kb on + strand, within Pf1N1B4_2742at 3080.834 kb on + strand, within Pf1N1B4_2742at 3080.835 kb on - strand, within Pf1N1B4_2742at 3080.859 kb on - strand, within Pf1N1B4_2742at 3080.859 kb on - strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.924 kb on + strand, within Pf1N1B4_2742at 3080.925 kb on - strand, within Pf1N1B4_2742at 3080.925 kb on - strand, within Pf1N1B4_2742at 3080.925 kb on - strand, within Pf1N1B4_2742at 3080.925 kb on - strand, within Pf1N1B4_2742at 3080.925 kb on - strand, within Pf1N1B4_2742at 3080.930 kb on + strand, within Pf1N1B4_2742at 3080.930 kb on + strand, within Pf1N1B4_2742at 3080.930 kb on + strand, within Pf1N1B4_2742at 3080.931 kb on - strand, within Pf1N1B4_2742at 3080.931 kb on - strand, within Pf1N1B4_2742at 3080.931 kb on - strand, within Pf1N1B4_2742at 3080.954 kb on + strand, within Pf1N1B4_2742at 3080.954 kb on + strand, within Pf1N1B4_2742at 3080.954 kb on + strand, within Pf1N1B4_2742at 3080.955 kb on - strand, within Pf1N1B4_2742at 3080.955 kb on - strand, within Pf1N1B4_2742at 3081.136 kb on - strand, within Pf1N1B4_2742at 3081.188 kb on - strand, within Pf1N1B4_2742at 3081.188 kb on - strand, within Pf1N1B4_2742at 3081.308 kb on + strand, within Pf1N1B4_2742at 3081.309 kb on - strandat 3081.475 kb on + strandat 3081.495 kb on + strandat 3081.495 kb on + strandat 3081.495 kb on + strandat 3081.495 kb on + strandat 3081.496 kb on - strandat 3081.496 kb on - strandat 3081.496 kb on - strandat 3081.496 kb on - strandat 3081.882 kb on + strand, within Pf1N1B4_2743at 3081.883 kb on - strand, within Pf1N1B4_2743at 3081.883 kb on - strand, within Pf1N1B4_2743at 3081.883 kb on - strand, within Pf1N1B4_2743at 3081.883 kb on - strand, within Pf1N1B4_2743at 3081.883 kb on - strand, within Pf1N1B4_2743at 3081.886 kb on + strand, within Pf1N1B4_2743at 3081.887 kb on - strand, within Pf1N1B4_2743at 3081.887 kb on - strandat 3081.887 kb on - strand, within Pf1N1B4_2743at 3081.955 kb on + strand, within Pf1N1B4_2743at 3081.955 kb on + strand, within Pf1N1B4_2743at 3081.955 kb on + strand, within Pf1N1B4_2743at 3081.955 kb on + strand, within Pf1N1B4_2743at 3081.955 kb on + strand, within Pf1N1B4_2743at 3081.956 kb on - strand, within Pf1N1B4_2743at 3081.956 kb on - strand, within Pf1N1B4_2743at 3081.956 kb on - strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.979 kb on + strand, within Pf1N1B4_2743at 3081.980 kb on - strand, within Pf1N1B4_2743at 3082.058 kb on + strand, within Pf1N1B4_2743at 3082.058 kb on + strand, within Pf1N1B4_2743at 3082.058 kb on + strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.059 kb on - strand, within Pf1N1B4_2743at 3082.061 kb on - strand, within Pf1N1B4_2743at 3082.061 kb on - strand, within Pf1N1B4_2743at 3082.451 kb on + strandat 3082.451 kb on + strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.452 kb on - strandat 3082.455 kb on + strandat 3082.456 kb on - strandat 3082.456 kb on - strandat 3082.456 kb on - strandat 3082.456 kb on - strandat 3082.505 kb on - strandat 3082.505 kb on - strandat 3082.780 kb on + strand, within Pf1N1B4_2744at 3082.781 kb on - strand, within Pf1N1B4_2744at 3082.810 kb on + strand, within Pf1N1B4_2744at 3082.849 kb on + strand, within Pf1N1B4_2744at 3082.849 kb on + strand, within Pf1N1B4_2744at 3082.849 kb on + strand, within Pf1N1B4_2744at 3082.849 kb on + strand, within Pf1N1B4_2744at 3082.850 kb on - strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.032 kb on + strandat 3083.032 kb on + strand, within Pf1N1B4_2744at 3083.033 kb on - strandat 3083.033 kb on - strand, within Pf1N1B4_2744at 3083.033 kb on - strand, within Pf1N1B4_2744at 3083.195 kb on - strand, within Pf1N1B4_2744at 3083.195 kb on - strand, within Pf1N1B4_2744

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C t1
remove
3,080,580 + -3.2
3,080,581 - -2.5
3,080,727 + Pf1N1B4_2742 0.19 +0.0
3,080,770 + Pf1N1B4_2742 0.24 +0.0
3,080,771 - Pf1N1B4_2742 0.24 -4.3
3,080,771 - Pf1N1B4_2742 0.24 -2.8
3,080,771 - Pf1N1B4_2742 0.24 +0.0
3,080,771 - Pf1N1B4_2742 0.24 +0.0
3,080,774 + Pf1N1B4_2742 0.24 +0.0
3,080,774 + Pf1N1B4_2742 0.24 +0.0
3,080,774 + Pf1N1B4_2742 0.24 -0.8
3,080,774 + Pf1N1B4_2742 0.24 +0.0
3,080,775 - Pf1N1B4_2742 0.24 -2.4
3,080,775 - Pf1N1B4_2742 0.24 -2.2
3,080,775 - Pf1N1B4_2742 0.24 +0.0
3,080,775 - Pf1N1B4_2742 0.24 -1.8
3,080,795 + Pf1N1B4_2742 0.26 +0.0
3,080,795 + Pf1N1B4_2742 0.26 -2.5
3,080,795 + Pf1N1B4_2742 0.26 +0.0
3,080,834 + Pf1N1B4_2742 0.30 +0.0
3,080,834 + Pf1N1B4_2742 0.30 -1.5
3,080,835 - Pf1N1B4_2742 0.31 +0.0
3,080,859 - Pf1N1B4_2742 0.33 +0.0
3,080,859 - Pf1N1B4_2742 0.33 -2.2
3,080,924 + Pf1N1B4_2742 0.40 +0.0
3,080,924 + Pf1N1B4_2742 0.40 +0.0
3,080,924 + Pf1N1B4_2742 0.40 +0.0
3,080,924 + Pf1N1B4_2742 0.40 +0.0
3,080,924 + Pf1N1B4_2742 0.40 -2.1
3,080,924 + Pf1N1B4_2742 0.40 +0.0
3,080,924 + Pf1N1B4_2742 0.40 -2.1
3,080,925 - Pf1N1B4_2742 0.40 -1.6
3,080,925 - Pf1N1B4_2742 0.40 +0.0
3,080,925 - Pf1N1B4_2742 0.40 -2.2
3,080,925 - Pf1N1B4_2742 0.40 +0.0
3,080,925 - Pf1N1B4_2742 0.40 +0.0
3,080,930 + Pf1N1B4_2742 0.40 +0.0
3,080,930 + Pf1N1B4_2742 0.40 +0.0
3,080,930 + Pf1N1B4_2742 0.40 -3.1
3,080,931 - Pf1N1B4_2742 0.41 +0.0
3,080,931 - Pf1N1B4_2742 0.41 +0.0
3,080,931 - Pf1N1B4_2742 0.41 +0.0
3,080,954 + Pf1N1B4_2742 0.43 +0.0
3,080,954 + Pf1N1B4_2742 0.43 +0.0
3,080,954 + Pf1N1B4_2742 0.43 +0.0
3,080,955 - Pf1N1B4_2742 0.43 +0.0
3,080,955 - Pf1N1B4_2742 0.43 +0.0
3,081,136 - Pf1N1B4_2742 0.62 +0.0
3,081,188 - Pf1N1B4_2742 0.67 +0.0
3,081,188 - Pf1N1B4_2742 0.67 -3.5
3,081,308 + Pf1N1B4_2742 0.80 +0.0
3,081,309 - -0.9
3,081,475 + -1.9
3,081,495 + +0.0
3,081,495 + +0.0
3,081,495 + +0.0
3,081,495 + +0.0
3,081,496 - +0.0
3,081,496 - +0.0
3,081,496 - -1.8
3,081,496 - +0.0
3,081,882 + Pf1N1B4_2743 0.43 +0.0
3,081,883 - Pf1N1B4_2743 0.43 -1.5
3,081,883 - Pf1N1B4_2743 0.43 -2.2
3,081,883 - Pf1N1B4_2743 0.43 +0.0
3,081,883 - Pf1N1B4_2743 0.43 +0.0
3,081,883 - Pf1N1B4_2743 0.43 +0.0
3,081,886 + Pf1N1B4_2743 0.43 +0.0
3,081,887 - Pf1N1B4_2743 0.43 +0.0
3,081,887 - -0.4
3,081,887 - Pf1N1B4_2743 0.43 +0.0
3,081,955 + Pf1N1B4_2743 0.51 +0.0
3,081,955 + Pf1N1B4_2743 0.51 +0.0
3,081,955 + Pf1N1B4_2743 0.51 +0.0
3,081,955 + Pf1N1B4_2743 0.51 +0.0
3,081,955 + Pf1N1B4_2743 0.51 +0.0
3,081,956 - Pf1N1B4_2743 0.51 +0.0
3,081,956 - Pf1N1B4_2743 0.51 +0.0
3,081,956 - Pf1N1B4_2743 0.51 +0.0
3,081,979 + Pf1N1B4_2743 0.53 +0.0
3,081,979 + Pf1N1B4_2743 0.53 -1.9
3,081,979 + Pf1N1B4_2743 0.53 -1.0
3,081,979 + Pf1N1B4_2743 0.53 +0.0
3,081,979 + Pf1N1B4_2743 0.53 +0.0
3,081,979 + Pf1N1B4_2743 0.53 +0.0
3,081,980 - Pf1N1B4_2743 0.54 -2.3
3,082,058 + Pf1N1B4_2743 0.62 +0.0
3,082,058 + Pf1N1B4_2743 0.62 +0.0
3,082,058 + Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 -1.2
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 -1.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 -2.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 +0.0
3,082,059 - Pf1N1B4_2743 0.62 -2.7
3,082,061 - Pf1N1B4_2743 0.63 +0.0
3,082,061 - Pf1N1B4_2743 0.63 +0.0
3,082,451 + -3.7
3,082,451 + -2.2
3,082,452 - +0.0
3,082,452 - -2.1
3,082,452 - -3.2
3,082,452 - +0.0
3,082,452 - +0.0
3,082,452 - +0.0
3,082,452 - +0.0
3,082,452 - +0.0
3,082,455 + +0.0
3,082,456 - +0.0
3,082,456 - -2.3
3,082,456 - +0.0
3,082,456 - +0.0
3,082,505 - +0.0
3,082,505 - -1.4
3,082,780 + Pf1N1B4_2744 0.19 +0.0
3,082,781 - Pf1N1B4_2744 0.19 -0.3
3,082,810 + Pf1N1B4_2744 0.23 +0.0
3,082,849 + Pf1N1B4_2744 0.28 +0.0
3,082,849 + Pf1N1B4_2744 0.28 +0.0
3,082,849 + Pf1N1B4_2744 0.28 -1.0
3,082,849 + Pf1N1B4_2744 0.28 +0.0
3,082,850 - Pf1N1B4_2744 0.28 +0.0
3,083,032 + Pf1N1B4_2744 0.52 +0.0
3,083,032 + Pf1N1B4_2744 0.52 -2.6
3,083,032 + Pf1N1B4_2744 0.52 +0.0
3,083,032 + Pf1N1B4_2744 0.52 -2.2
3,083,032 + Pf1N1B4_2744 0.52 -1.6
3,083,032 + Pf1N1B4_2744 0.52 +0.0
3,083,032 + -2.0
3,083,032 + Pf1N1B4_2744 0.52 +0.0
3,083,033 - -2.2
3,083,033 - Pf1N1B4_2744 0.52 +0.0
3,083,033 - Pf1N1B4_2744 0.52 +0.0
3,083,195 - Pf1N1B4_2744 0.73 -4.7
3,083,195 - Pf1N1B4_2744 0.73 +0.0

Or see this region's nucleotide sequence