Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2264

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
2,579,648	+		Pf1N1B4_2263	0.15	-2.1
2,579,648	+		Pf1N1B4_2263	0.15	-0.0
2,579,648	+		Pf1N1B4_2263	0.15	-2.8
2,579,649	-		Pf1N1B4_2263	0.16	-0.0
2,579,714	+		Pf1N1B4_2263	0.23	-2.5
2,579,770	+		Pf1N1B4_2263	0.29	-3.8
2,579,954	+		Pf1N1B4_2263	0.50	-1.9
2,579,955	-		Pf1N1B4_2263	0.50	-0.0
2,579,955	-		Pf1N1B4_2263	0.50	-2.8
2,579,955	-		Pf1N1B4_2263	0.50	-2.1
2,579,955	-		Pf1N1B4_2263	0.50	-0.0
2,579,955	-				-1.7
2,580,612	+				-4.1
2,580,613	-				-0.0
2,580,613	-				-0.0
2,580,628	+				-1.4
2,580,628	+				-0.0
2,580,628	+				-0.0
2,580,629	-				-2.5
2,580,629	-				-4.3
2,580,709	+				-0.0
2,580,709	+				-2.3
2,580,710	-				-0.0
2,580,710	-				-0.0
2,580,710	-				-0.0
2,580,712	+				-0.0
2,580,712	+				-0.0
2,580,713	-				-1.9
2,580,713	-				-0.0
2,580,713	-				-0.0
2,580,725	+				-0.0
2,580,727	+				-0.0
2,580,727	+				-0.0
2,580,727	+				-0.0
2,580,727	+				-0.0
2,580,727	+				-0.0
2,580,727	+				-0.0
2,580,728	-				-0.0
2,580,728	-				-0.0
2,580,728	-				-0.0
2,580,728	-				-2.4
2,580,748	+				-2.8
2,580,748	+				-1.8
2,580,748	+				-0.0
2,580,749	-				-0.0
2,580,847	+				-3.6
2,580,847	+				-3.0
2,580,847	+				-0.0
2,580,848	-				-0.0
2,580,848	-				-0.0
2,580,848	-				-2.6
2,580,848	-				-3.1
2,580,848	-				-0.0
2,580,848	-				-0.0
2,581,501	+		Pf1N1B4_2264	0.36	-0.0
2,581,501	+		Pf1N1B4_2264	0.36	-0.0
2,581,501	+		Pf1N1B4_2264	0.36	-0.0
2,581,501	+		Pf1N1B4_2264	0.36	-2.8
2,581,501	+		Pf1N1B4_2264	0.36	-0.0
2,581,501	+		Pf1N1B4_2264	0.36	-0.0
2,581,502	-		Pf1N1B4_2264	0.36	-4.4
2,581,502	-		Pf1N1B4_2264	0.36	-2.2
2,581,502	-		Pf1N1B4_2264	0.36	-0.0
2,581,502	-		Pf1N1B4_2264	0.36	-0.0
2,581,502	-		Pf1N1B4_2264	0.36	-1.6
2,581,505	-		Pf1N1B4_2264	0.36	-0.0
2,581,561	+		Pf1N1B4_2264	0.39	-2.2
2,581,561	+		Pf1N1B4_2264	0.39	-0.0
2,581,562	-		Pf1N1B4_2264	0.39	-0.0
2,581,562	-		Pf1N1B4_2264	0.39	-0.0
2,581,562	-		Pf1N1B4_2264	0.39	-0.0
2,581,562	-		Pf1N1B4_2264	0.39	-0.0
2,581,562	-		Pf1N1B4_2264	0.39	-2.3
2,581,729	+		Pf1N1B4_2264	0.46	-0.0
2,581,730	-		Pf1N1B4_2264	0.46	-0.0
2,581,730	-		Pf1N1B4_2264	0.46	-0.0
2,581,811	-		Pf1N1B4_2264	0.49	-0.0
2,582,149	+		Pf1N1B4_2264	0.63	-0.0
2,582,150	-		Pf1N1B4_2264	0.63	-3.5
2,582,150	-		Pf1N1B4_2264	0.63	-0.0
2,582,150	-		Pf1N1B4_2264	0.63	-0.0
2,582,185	+		Pf1N1B4_2264	0.65	-0.0
2,582,186	-		Pf1N1B4_2264	0.65	-0.0
2,582,249	+		Pf1N1B4_2264	0.67	-3.3
2,582,249	+		Pf1N1B4_2264	0.67	-3.4
2,582,250	-		Pf1N1B4_2264	0.67	-0.0
2,582,406	+		Pf1N1B4_2264	0.74	-1.5
2,582,447	-		Pf1N1B4_2264	0.75	-0.0
2,582,473	+		Pf1N1B4_2264	0.77	-0.0
2,582,473	+		Pf1N1B4_2264	0.77	-0.0
2,582,474	-		Pf1N1B4_2264	0.77	-2.7
2,582,474	-		Pf1N1B4_2264	0.77	-0.0
2,582,474	-		Pf1N1B4_2264	0.77	-0.0
2,582,515	+		Pf1N1B4_2264	0.78	-0.0
2,582,516	-		Pf1N1B4_2264	0.78	-0.0
2,582,524	+				-0.0
2,582,618	-		Pf1N1B4_2264	0.83	-3.2
2,582,638	+		Pf1N1B4_2264	0.83	-0.0
2,582,689	+		Pf1N1B4_2264	0.85	-0.0
2,582,689	+		Pf1N1B4_2264	0.85	-0.0
2,582,690	-		Pf1N1B4_2264	0.86	-0.0
2,582,690	-		Pf1N1B4_2264	0.86	-0.0
2,582,690	-		Pf1N1B4_2264	0.86	-0.0
2,582,690	-		Pf1N1B4_2264	0.86	-0.0
2,582,711	+		Pf1N1B4_2264	0.86	-4.1
2,582,833	+				-3.2
2,582,833	+				-0.0
2,582,833	+				-0.0
2,582,834	-				-2.8
2,582,834	-				-0.0
2,582,834	-				-0.0
2,582,968	+				-0.0
2,582,968	+				-3.7
2,582,968	+				-0.0
2,582,968	+				-0.0
2,582,974	+				-2.5
2,582,974	+				-0.0
2,582,974	+				-2.6
2,582,974	+				-0.0
2,582,974	+				-0.0
2,582,974	+				-2.0
2,582,975	-				-0.0
2,582,975	-				-0.0
2,583,018	+				-0.6
2,583,018	+				-0.0
2,583,018	+				-0.0
2,583,018	+				-0.0
2,583,019	-				-0.0
2,583,019	-				-1.4
2,583,089	+				-0.0
2,583,143	+				-0.0
2,583,143	+				-0.0
2,583,143	+				-1.6
2,583,143	+				-0.0
2,583,143	+				-1.8
2,583,143	+				-0.0
2,583,144	-				-0.0
2,583,293	+		Pf1N1B4_2265	0.26	-0.0
2,583,293	+		Pf1N1B4_2265	0.26	-1.0
2,583,378	+		Pf1N1B4_2265	0.41	-0.0
2,583,379	-		Pf1N1B4_2265	0.41	-0.0
2,583,379	-		Pf1N1B4_2265	0.41	-2.9
2,583,379	-		Pf1N1B4_2265	0.41	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	-1.0
2,583,434	+		Pf1N1B4_2265	0.50	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	-0.0
2,583,434	+		Pf1N1B4_2265	0.50	+1.1
2,583,435	-		Pf1N1B4_2265	0.51	-2.7
2,583,435	-		Pf1N1B4_2265	0.51	-0.0
2,583,435	-		Pf1N1B4_2265	0.51	-0.0
2,583,435	-		Pf1N1B4_2265	0.51	-0.0
2,583,435	-		Pf1N1B4_2265	0.51	-2.8
2,583,435	-		Pf1N1B4_2265	0.51	-0.0
2,583,435	-		Pf1N1B4_2265	0.51	-0.0
2,583,454	+		Pf1N1B4_2265	0.54	-3.4
2,583,454	+		Pf1N1B4_2265	0.54	-0.0
2,583,454	+		Pf1N1B4_2265	0.54	-0.0
2,583,455	-		Pf1N1B4_2265	0.54	-0.0
2,583,455	-		Pf1N1B4_2265	0.54	-2.8
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-1.7
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-4.1
2,583,458	+		Pf1N1B4_2265	0.55	-3.0
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,458	+		Pf1N1B4_2265	0.55	-3.0
2,583,458	+		Pf1N1B4_2265	0.55	-0.0
2,583,459	-		Pf1N1B4_2265	0.55	-0.0
2,583,459	-		Pf1N1B4_2265	0.55	-0.0
2,583,459	-				-1.1
2,583,459	-		Pf1N1B4_2265	0.55	-1.3
2,583,459	-		Pf1N1B4_2265	0.55	-2.9
2,583,459	-		Pf1N1B4_2265	0.55	-2.2
2,583,459	-		Pf1N1B4_2265	0.55	-3.2
2,583,459	-		Pf1N1B4_2265	0.55	-0.0
2,583,459	-		Pf1N1B4_2265	0.55	-0.0
2,583,624	-		Pf1N1B4_2265	0.83	-0.0
2,583,624	-		Pf1N1B4_2265	0.83	-0.0
2,583,624	-		Pf1N1B4_2265	0.83	-2.2
2,583,645	-		Pf1N1B4_2265	0.87	-0.0
2,583,655	+		Pf1N1B4_2265	0.89	-1.6
2,583,707	+				-0.0
2,583,746	-				-3.3
2,583,813	-				-0.0
2,583,905	+				-0.0
2,583,905	+				-2.6
2,583,906	-				-1.7
2,583,906	-				-0.5
2,583,917	+		Pf1N1B4_2266	0.10	-0.0
2,583,918	-		Pf1N1B4_2266	0.10	-0.0
2,583,980	+		Pf1N1B4_2266	0.17	-1.8
2,583,981	-		Pf1N1B4_2266	0.17	-2.7