Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1901

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
2,173,549	+				-2.1
2,173,550	-				-3.3
2,173,568	+				-0.0
2,173,568	+				-0.0
2,173,569	-				-0.0
2,173,620	-				-1.9
2,173,696	-				-0.0
2,173,696	-				-0.0
2,173,696	-				-0.0
2,173,705	-				-0.0
2,173,881	+		Pf1N1B4_1899	0.38	-0.0
2,173,882	-		Pf1N1B4_1899	0.38	-0.0
2,173,882	-		Pf1N1B4_1899	0.38	-0.0
2,173,914	-		Pf1N1B4_1899	0.46	-0.0
2,173,941	-		Pf1N1B4_1899	0.52	-0.0
2,174,056	+		Pf1N1B4_1899	0.81	-2.7
2,174,056	+		Pf1N1B4_1899	0.81	-1.0
2,174,056	+		Pf1N1B4_1899	0.81	-2.6
2,174,056	+		Pf1N1B4_1899	0.81	-0.0
2,174,057	-		Pf1N1B4_1899	0.81	-0.0
2,174,057	-		Pf1N1B4_1899	0.81	-0.0
2,174,057	-		Pf1N1B4_1899	0.81	-0.0
2,174,057	-		Pf1N1B4_1899	0.81	-0.0
2,174,228	+		Pf1N1B4_1900	0.29	-0.0
2,174,228	+		Pf1N1B4_1900	0.29	-0.0
2,174,228	+		Pf1N1B4_1900	0.29	-0.0
2,174,229	-		Pf1N1B4_1900	0.30	-0.0
2,174,229	-		Pf1N1B4_1900	0.30	-0.0
2,174,267	+		Pf1N1B4_1900	0.41	-0.0
2,174,267	+		Pf1N1B4_1900	0.41	-0.0
2,174,267	+		Pf1N1B4_1900	0.41	-1.6
2,174,268	-		Pf1N1B4_1900	0.42	-0.0
2,174,268	-		Pf1N1B4_1900	0.42	-2.7
2,174,268	-		Pf1N1B4_1900	0.42	-1.8
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-1.8
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-2.4
2,174,280	+		Pf1N1B4_1900	0.45	-2.1
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,280	+		Pf1N1B4_1900	0.45	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-3.3
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-2.3
2,174,281	-		Pf1N1B4_1900	0.46	-1.0
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-1.3
2,174,281	-		Pf1N1B4_1900	0.46	-1.7
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,281	-		Pf1N1B4_1900	0.46	-1.7
2,174,281	-		Pf1N1B4_1900	0.46	-0.0
2,174,424	+		Pf1N1B4_1900	0.89	-1.2
2,174,424	+		Pf1N1B4_1900	0.89	-1.6
2,174,424	+		Pf1N1B4_1900	0.89	-0.0
2,174,424	+		Pf1N1B4_1900	0.89	-0.0
2,174,425	-		Pf1N1B4_1900	0.90	-0.0
2,174,425	-		Pf1N1B4_1900	0.90	-0.0
2,174,425	-		Pf1N1B4_1900	0.90	-1.4
2,174,439	+				-0.0
2,174,470	+				-1.0
2,174,475	+				-0.0
2,174,475	+				-2.3
2,174,475	+				-0.4
2,174,475	+				-0.0
2,174,475	+				-0.0
2,174,476	-				-0.0
2,174,476	-				-0.0
2,174,476	-				-0.0
2,174,476	-				-2.6
2,174,476	-				-0.0
2,174,476	-				-2.2
2,174,476	-				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-0.0
2,174,514	+				-1.0
2,174,514	+				-0.0
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-2.9
2,174,515	-				-0.0
2,174,515	-				-1.4
2,174,515	-				-0.0
2,174,515	-				-3.8
2,174,515	-				-2.7
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-0.0
2,174,515	-				-2.6
2,174,515	-				-2.9
2,174,515	-				-0.0
2,174,516	+				-0.0
2,174,516	+				-1.7
2,174,516	+				-1.9
2,174,517	-				-0.0
2,174,517	-				-2.6
2,174,517	-				-0.0
2,174,517	-				-0.0
2,174,517	-				-0.0
2,174,517	-				-0.0
2,174,517	-				-0.0
2,174,517	-				-0.0
2,174,518	+				-0.0
2,174,518	+				-1.7
2,174,518	+				-0.0
2,174,518	+				-0.0
2,174,518	+				-1.9
2,174,518	+				-1.9
2,174,518	+				-1.8
2,174,518	+				-1.6
2,174,519	-				-0.0
2,174,519	-				-1.5
2,174,519	-				-0.0
2,174,519	-				-0.0
2,174,519	-				-1.5
2,174,519	-				-0.0
2,174,529	+				-0.0
2,174,529	+				-0.0
2,174,529	+				-0.0
2,174,582	+				-1.3
2,174,583	-				-2.0
2,174,583	-				-0.0
2,174,597	-				-3.4
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,943	+		Pf1N1B4_1901	0.60	-2.7
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,943	+		Pf1N1B4_1901	0.60	-3.9
2,174,943	+		Pf1N1B4_1901	0.60	-0.0
2,174,944	-		Pf1N1B4_1901	0.60	-4.3
2,174,944	-		Pf1N1B4_1901	0.60	-0.0
2,174,944	-		Pf1N1B4_1901	0.60	-0.0
2,175,080	-		Pf1N1B4_1901	0.81	-0.0
2,175,203	+				-0.0
2,175,204	-				-0.0
2,175,207	-				-0.0
2,175,207	-				-0.0
2,175,207	-				-3.2
2,175,244	-				-0.0
2,175,244	-				-0.0
2,175,276	+				-1.0
2,175,277	-				-0.0
2,175,373	+		Pf1N1B4_1902	0.10	-2.4
2,175,402	+		Pf1N1B4_1902	0.13	-2.8
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-4.0
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-2.2
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,402	+		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-3.8
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-2.0
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-				-4.0
2,175,403	-		Pf1N1B4_1902	0.13	-0.0
2,175,403	-		Pf1N1B4_1902	0.13	-2.0
2,175,403	-		Pf1N1B4_1902	0.13	-3.0
2,175,403	-				-2.8
2,175,406	-		Pf1N1B4_1902	0.14	-0.0
2,175,469	+		Pf1N1B4_1902	0.20	-0.0
2,175,537	+		Pf1N1B4_1902	0.28	-0.0
2,175,537	+		Pf1N1B4_1902	0.28	-2.3
2,175,537	+		Pf1N1B4_1902	0.28	-0.0
2,175,538	-		Pf1N1B4_1902	0.28	-0.0
2,175,538	-		Pf1N1B4_1902	0.28	-0.0
2,175,538	-		Pf1N1B4_1902	0.28	-0.0
2,175,619	+		Pf1N1B4_1902	0.36	-2.2
2,175,619	+		Pf1N1B4_1902	0.36	-2.9
2,175,619	+		Pf1N1B4_1902	0.36	-2.6
2,175,619	+		Pf1N1B4_1902	0.36	-3.2
2,175,619	+		Pf1N1B4_1902	0.36	-1.0
2,175,619	+		Pf1N1B4_1902	0.36	-0.0
2,175,620	-		Pf1N1B4_1902	0.36	-0.0
2,175,701	+		Pf1N1B4_1902	0.45	-0.0
2,175,702	-		Pf1N1B4_1902	0.45	-2.0
2,175,901	-		Pf1N1B4_1902	0.66	-0.0
2,176,055	-		Pf1N1B4_1902	0.82	-0.0
2,176,055	-		Pf1N1B4_1902	0.82	-0.0