Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1752

Experiment: Nitrate reduction, replicate C t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t1
2,000,942	+				-1.4
2,000,942	+				-0.0
2,000,942	+				-0.0
2,000,943	-				-0.0
2,000,943	-				-3.0
2,000,943	-				-0.0
2,000,953	+				-1.7
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-1.0
2,000,953	+				-1.2
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-2.1
2,000,953	+				-2.4
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-1.8
2,000,953	+				-0.0
2,000,953	+				-1.7
2,000,954	-				-2.8
2,000,954	-				-0.0
2,000,954	-				-3.3
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-2.5
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-2.0
2,000,954	-				-0.0
2,000,954	-				-2.2
2,000,954	-				-2.5
2,000,954	-				-0.0
2,000,954	-				-2.3
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-1.8
2,000,954	-				-0.0
2,000,955	+				-2.9
2,000,955	+				-0.0
2,000,955	+				-0.0
2,000,956	-				-0.0
2,000,956	-				-0.0
2,000,956	-				-3.0
2,000,957	+				-1.2
2,000,957	+				-1.0
2,000,957	+				-2.0
2,000,957	+				-0.0
2,000,957	+				-0.0
2,000,957	+				-0.0
2,000,957	+				-2.6
2,000,958	-				-0.0
2,000,958	-				-1.2
2,000,958	-				-0.0
2,000,958	-				-4.8
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-3.3
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,968	+				-0.0
2,000,969	-				-0.0
2,000,969	-				-0.0
2,000,972	+				-3.6
2,001,161	-		Pf1N1B4_1749	0.61	-4.1
2,001,161	-		Pf1N1B4_1749	0.61	-4.4
2,001,161	-		Pf1N1B4_1749	0.61	-0.0
2,001,161	-				-2.5
2,001,257	-				-0.0
2,001,257	-				-2.0
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,258	+				-0.0
2,001,258	+				-0.0
2,001,258	+				-5.1
2,001,258	+				-0.0
2,001,258	+				-1.6
2,001,259	-				-0.0
2,001,259	-				-2.3
2,001,259	-				-2.6
2,001,272	+				-3.0
2,001,272	+				-0.0
2,001,273	-				-0.0
2,001,273	-				-0.0
2,001,273	-				-0.0
2,001,444	-		Pf1N1B4_1750	0.63	-0.0
2,001,516	+		Pf1N1B4_1750	0.89	-1.7
2,001,517	-				-1.3
2,001,517	-		Pf1N1B4_1750	0.89	-0.0
2,001,552	-				-2.7
2,001,720	+		Pf1N1B4_1751	0.69	-0.0
2,001,721	-		Pf1N1B4_1751	0.70	-2.0
2,001,817	+				-0.0
2,001,887	+				-0.0
2,001,888	-				-2.5
2,001,931	+				-0.0
2,001,931	+				-0.0
2,002,002	+		Pf1N1B4_1752	0.16	-1.8
2,002,003	-		Pf1N1B4_1752	0.16	-0.0
2,002,033	+		Pf1N1B4_1752	0.22	-2.3
2,002,033	+		Pf1N1B4_1752	0.22	-1.0
2,002,033	+		Pf1N1B4_1752	0.22	-0.0
2,002,033	+		Pf1N1B4_1752	0.22	-0.0
2,002,033	+		Pf1N1B4_1752	0.22	-0.0
2,002,033	+		Pf1N1B4_1752	0.22	-2.5
2,002,034	-		Pf1N1B4_1752	0.23	-0.0
2,002,034	-		Pf1N1B4_1752	0.23	-0.0
2,002,037	+		Pf1N1B4_1752	0.23	-2.4
2,002,037	+		Pf1N1B4_1752	0.23	-1.9
2,002,037	+		Pf1N1B4_1752	0.23	-0.0
2,002,038	-		Pf1N1B4_1752	0.23	-0.0
2,002,038	-		Pf1N1B4_1752	0.23	-0.0
2,002,040	-		Pf1N1B4_1752	0.24	-0.0
2,002,231	+		Pf1N1B4_1752	0.65	-0.0
2,002,231	+		Pf1N1B4_1752	0.65	-0.0
2,002,231	+		Pf1N1B4_1752	0.65	-0.0
2,002,231	+		Pf1N1B4_1752	0.65	-0.0
2,002,231	+				-1.8
2,002,231	+		Pf1N1B4_1752	0.65	-2.0
2,002,231	+		Pf1N1B4_1752	0.65	-0.0
2,002,232	-		Pf1N1B4_1752	0.65	-0.0
2,002,232	-		Pf1N1B4_1752	0.65	-0.0
2,002,232	-		Pf1N1B4_1752	0.65	-0.0
2,002,232	-		Pf1N1B4_1752	0.65	-0.0
2,002,345	+				-0.0
2,002,392	-				-2.9
2,002,456	+				-0.8
2,002,456	+				-0.0
2,002,457	-				-1.5
2,002,457	-				-0.0
2,002,464	+				-2.6
2,002,464	+				-0.0
2,002,549	+				-0.0
2,002,549	+				-3.4
2,002,550	-				-0.0
2,002,550	-				-0.0
2,002,550	-				-0.0
2,002,550	-				-2.4
2,002,557	+				-0.0
2,002,557	+				-0.0
2,002,558	-				-2.8
2,002,558	-				-1.6
2,002,559	+				-1.9
2,002,559	+				-2.3
2,002,559	+				-0.0
2,002,560	-				-0.0
2,002,560	-				-0.0
2,002,560	-				-0.0
2,002,631	+				-0.0
2,002,632	-				-2.5
2,002,632	-				-0.0
2,002,761	-		Pf1N1B4_1753	0.29	-2.5
2,002,761	-		Pf1N1B4_1753	0.29	-2.8
2,002,761	-		Pf1N1B4_1753	0.29	-1.0
2,002,764	+		Pf1N1B4_1753	0.30	-1.6
2,002,765	-		Pf1N1B4_1753	0.30	-0.0
2,002,948	+		Pf1N1B4_1753	0.64	-0.0
2,002,995	+		Pf1N1B4_1753	0.73	-3.5
2,002,995	+		Pf1N1B4_1753	0.73	-2.5
2,002,995	+		Pf1N1B4_1753	0.73	-0.0
2,002,995	+		Pf1N1B4_1753	0.73	-0.0
2,002,996	-		Pf1N1B4_1753	0.73	-1.8
2,002,996	-		Pf1N1B4_1753	0.73	-1.7
2,002,996	-		Pf1N1B4_1753	0.73	-2.1
2,002,996	-				-2.4
2,002,996	-		Pf1N1B4_1753	0.73	-0.0
2,002,996	-		Pf1N1B4_1753	0.73	-3.3
2,002,997	+		Pf1N1B4_1753	0.74	-1.8
2,003,095	+				-0.0
2,003,095	+				-3.9
2,003,095	+				-0.0
2,003,095	+				-0.0
2,003,096	-				-1.3
2,003,096	-				-0.9
2,003,096	-				-0.0
2,003,153	+				-2.9
2,003,153	+				-3.0
2,003,153	+				-0.0
2,003,154	-				-0.0
2,003,154	-				-0.0
2,003,154	-				-0.0
2,003,192	+				-0.0
2,003,192	+				-0.0
2,003,193	-				-1.8
2,003,239	+		Pf1N1B4_1754	0.11	-0.0
2,003,346	+		Pf1N1B4_1754	0.25	-0.0
2,003,363	+		Pf1N1B4_1754	0.27	-0.0