Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17220

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17200 and PGA1_c17210 are separated by 76 nucleotidesPGA1_c17210 and PGA1_c17220 overlap by 1 nucleotidesPGA1_c17220 and PGA1_c17230 are separated by 284 nucleotides PGA1_c17200: PGA1_c17200 - transcriptional regulator, TetR family, at 1,794,643 to 1,795,119 _c17200 PGA1_c17210: PGA1_c17210 - cell division protein ZapA-like protein, at 1,795,196 to 1,795,594 _c17210 PGA1_c17220: PGA1_c17220 - hypothetical protein, at 1,795,594 to 1,796,622 _c17220 PGA1_c17230: PGA1_c17230 - transketolase TktA, at 1,796,907 to 1,798,928 _c17230 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1794.604 kb on - strandat 1794.608 kb on - strandat 1794.668 kb on + strandat 1794.754 kb on + strand, within PGA1_c17200at 1794.762 kb on - strand, within PGA1_c17200at 1794.762 kb on - strand, within PGA1_c17200at 1794.765 kb on + strand, within PGA1_c17200at 1794.839 kb on - strand, within PGA1_c17200at 1794.978 kb on - strand, within PGA1_c17200at 1795.152 kb on - strandat 1795.152 kb on - strandat 1795.476 kb on + strand, within PGA1_c17210at 1795.527 kb on - strand, within PGA1_c17210at 1795.537 kb on - strand, within PGA1_c17210at 1795.552 kb on + strand, within PGA1_c17210at 1795.726 kb on + strand, within PGA1_c17220at 1795.749 kb on + strand, within PGA1_c17220at 1795.767 kb on - strand, within PGA1_c17220at 1795.767 kb on - strand, within PGA1_c17220at 1795.777 kb on - strand, within PGA1_c17220at 1795.898 kb on - strand, within PGA1_c17220at 1796.156 kb on + strand, within PGA1_c17220at 1796.382 kb on + strand, within PGA1_c17220at 1796.382 kb on + strand, within PGA1_c17220at 1796.390 kb on - strand, within PGA1_c17220at 1796.441 kb on + strand, within PGA1_c17220at 1796.458 kb on + strand, within PGA1_c17220at 1796.466 kb on - strand, within PGA1_c17220at 1796.503 kb on - strand, within PGA1_c17220at 1796.523 kb on + strandat 1796.738 kb on + strandat 1796.772 kb on + strandat 1796.801 kb on - strandat 1796.840 kb on + strandat 1796.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,794,604 - -0.2
1,794,608 - +0.0
1,794,668 + +0.2
1,794,754 + PGA1_c17200 0.23 +0.4
1,794,762 - PGA1_c17200 0.25 +0.5
1,794,762 - PGA1_c17200 0.25 +0.1
1,794,765 + PGA1_c17200 0.26 +0.3
1,794,839 - PGA1_c17200 0.41 -0.1
1,794,978 - PGA1_c17200 0.70 -0.6
1,795,152 - -0.7
1,795,152 - +0.2
1,795,476 + PGA1_c17210 0.70 -1.1
1,795,527 - PGA1_c17210 0.83 -1.9
1,795,537 - PGA1_c17210 0.85 -2.7
1,795,552 + PGA1_c17210 0.89 -1.6
1,795,726 + PGA1_c17220 0.13 -1.8
1,795,749 + PGA1_c17220 0.15 -3.6
1,795,767 - PGA1_c17220 0.17 -3.2
1,795,767 - PGA1_c17220 0.17 -2.0
1,795,777 - PGA1_c17220 0.18 -1.3
1,795,898 - PGA1_c17220 0.30 -2.2
1,796,156 + PGA1_c17220 0.55 -1.5
1,796,382 + PGA1_c17220 0.77 -2.7
1,796,382 + PGA1_c17220 0.77 -3.9
1,796,390 - PGA1_c17220 0.77 -3.2
1,796,441 + PGA1_c17220 0.82 -2.4
1,796,458 + PGA1_c17220 0.84 -3.6
1,796,466 - PGA1_c17220 0.85 -3.8
1,796,503 - PGA1_c17220 0.88 -3.1
1,796,523 + -3.4
1,796,738 + -1.5
1,796,772 + -2.8
1,796,801 - +0.2
1,796,840 + +0.5
1,796,848 - -0.5

Or see this region's nucleotide sequence