Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22960

Experiment: Dilute LB (1/20)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22955 and BWI76_RS22960 are separated by 353 nucleotidesBWI76_RS22960 and BWI76_RS22965 are separated by 198 nucleotides BWI76_RS22955: BWI76_RS22955 - transcriptional regulator GcvA, at 4,792,721 to 4,793,638 _RS22955 BWI76_RS22960: BWI76_RS22960 - YgdI/YgdR family lipoprotein, at 4,793,992 to 4,794,216 _RS22960 BWI76_RS22965: BWI76_RS22965 - cysteine sulfinate desulfinase, at 4,794,415 to 4,795,620 _RS22965 Position (kb) 4793 4794 4795Strain fitness (log2 ratio) -1 0 1at 4793.060 kb on + strand, within BWI76_RS22955at 4793.359 kb on + strand, within BWI76_RS22955at 4793.402 kb on - strand, within BWI76_RS22955at 4793.485 kb on + strand, within BWI76_RS22955at 4793.485 kb on + strand, within BWI76_RS22955at 4793.636 kb on - strandat 4793.832 kb on + strandat 4793.923 kb on - strandat 4794.029 kb on + strand, within BWI76_RS22960at 4794.168 kb on + strand, within BWI76_RS22960at 4794.176 kb on - strand, within BWI76_RS22960at 4794.266 kb on + strandat 4794.269 kb on - strandat 4794.422 kb on + strandat 4794.714 kb on - strand, within BWI76_RS22965at 4794.807 kb on + strand, within BWI76_RS22965at 4794.823 kb on - strand, within BWI76_RS22965at 4794.904 kb on - strand, within BWI76_RS22965

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Per-strain Table

Position Strand Gene LocusTag Fraction Dilute LB (1/20)
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4,793,060 + BWI76_RS22955 0.37 -0.3
4,793,359 + BWI76_RS22955 0.69 -0.3
4,793,402 - BWI76_RS22955 0.74 -0.3
4,793,485 + BWI76_RS22955 0.83 -1.3
4,793,485 + BWI76_RS22955 0.83 +0.4
4,793,636 - -1.2
4,793,832 + +0.2
4,793,923 - -0.8
4,794,029 + BWI76_RS22960 0.16 +0.4
4,794,168 + BWI76_RS22960 0.78 -0.6
4,794,176 - BWI76_RS22960 0.82 -0.9
4,794,266 + +0.4
4,794,269 - +0.5
4,794,422 + -0.5
4,794,714 - BWI76_RS22965 0.25 +0.2
4,794,807 + BWI76_RS22965 0.33 -0.1
4,794,823 - BWI76_RS22965 0.34 +0.4
4,794,904 - BWI76_RS22965 0.41 -0.4

Or see this region's nucleotide sequence