Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3252

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3250 and DVU3251 are separated by 407 nucleotidesDVU3251 and DVU3252 are separated by 10 nucleotidesDVU3252 and DVU3253 are separated by 87 nucleotides DVU3250: DVU3250 - hypothetical protein (TIGR), at 3,423,100 to 3,423,744 DVU3250 DVU3251: DVU3251 - nitrite transporter, HPP family (from data), at 3,424,152 to 3,424,691 DVU3251 DVU3252: DVU3252 - hypothetical protein (TIGR), at 3,424,702 to 3,424,953 DVU3252 DVU3253: DVU3253 - phenylacetate-coenzyme A ligase, putative (TIGR), at 3,425,041 to 3,426,306 DVU3253 Position (kb) 3424 3425Strain fitness (log2 ratio) -1 0 1 2at 3423.742 kb on + strandat 3423.876 kb on + strandat 3424.001 kb on + strandat 3424.033 kb on + strandat 3424.078 kb on - strandat 3424.174 kb on + strandat 3424.182 kb on - strandat 3424.277 kb on + strand, within DVU3251at 3424.277 kb on - strand, within DVU3251at 3424.315 kb on + strand, within DVU3251at 3424.323 kb on + strand, within DVU3251at 3424.382 kb on - strand, within DVU3251at 3424.436 kb on - strand, within DVU3251at 3424.478 kb on - strand, within DVU3251at 3424.480 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.565 kb on - strand, within DVU3251at 3424.565 kb on - strand, within DVU3251at 3424.657 kb on - strandat 3424.692 kb on + strandat 3424.692 kb on + strandat 3424.723 kb on - strandat 3425.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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3,423,742 + -0.3
3,423,876 + -0.1
3,424,001 + +0.3
3,424,033 + -0.3
3,424,078 - -0.2
3,424,174 + +1.8
3,424,182 - -0.3
3,424,277 + DVU3251 0.23 +0.0
3,424,277 - DVU3251 0.23 -0.5
3,424,315 + DVU3251 0.30 -0.3
3,424,323 + DVU3251 0.32 -0.4
3,424,382 - DVU3251 0.43 -0.4
3,424,436 - DVU3251 0.53 +1.5
3,424,478 - DVU3251 0.60 -0.5
3,424,480 - DVU3251 0.61 -0.4
3,424,503 - DVU3251 0.65 +0.6
3,424,503 - DVU3251 0.65 -1.1
3,424,503 - DVU3251 0.65 +0.3
3,424,565 - DVU3251 0.76 +1.0
3,424,565 - DVU3251 0.76 +0.2
3,424,657 - -0.1
3,424,692 + -0.1
3,424,692 + -0.1
3,424,723 - +0.6
3,425,025 + -0.5

Or see this region's nucleotide sequence