Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0906

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecJ and lipA are separated by 98 nucleotideslipA and lipB overlap by 71 nucleotideslipB and DVU0907 overlap by 14 nucleotides DVU0904: recJ - single-stranded-DNA-specific exonuclease RecJ (TIGR), at 995,665 to 997,380 recJ DVU0905: lipA - lipoic acid synthetase (TIGR), at 997,479 to 998,375 lipA DVU0906: lipB - lipoate-protein ligase B (TIGR), at 998,305 to 998,961 lipB DVU0907: DVU0907 - conserved domain protein (TIGR), at 998,948 to 1,001,887 DVU0907 Position (kb) 998 999Strain fitness (log2 ratio) -2 -1 0 1at 997.385 kb on + strandat 997.539 kb on + strandat 997.545 kb on + strandat 997.668 kb on - strand, within lipAat 997.795 kb on + strand, within lipAat 997.803 kb on - strand, within lipAat 997.813 kb on - strand, within lipAat 997.813 kb on - strand, within lipAat 997.879 kb on - strand, within lipAat 997.907 kb on - strand, within lipAat 997.968 kb on + strand, within lipAat 997.976 kb on - strand, within lipAat 997.986 kb on - strand, within lipAat 997.986 kb on - strand, within lipAat 998.021 kb on - strand, within lipAat 998.069 kb on + strand, within lipAat 998.252 kb on - strand, within lipAat 998.264 kb on - strand, within lipAat 998.277 kb on - strand, within lipAat 998.277 kb on - strand, within lipAat 998.277 kb on - strand, within lipAat 998.383 kb on - strand, within lipBat 998.554 kb on - strand, within lipBat 998.587 kb on + strand, within lipBat 998.601 kb on + strand, within lipBat 998.859 kb on + strand, within lipBat 998.923 kb on - strandat 998.927 kb on + strandat 999.021 kb on + strandat 999.039 kb on + strandat 999.051 kb on + strandat 999.116 kb on + strandat 999.124 kb on - strandat 999.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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997,385 + -0.4
997,539 + -2.3
997,545 + -0.6
997,668 - lipA DVU0905 0.21 -1.4
997,795 + lipA DVU0905 0.35 -2.5
997,803 - lipA DVU0905 0.36 -0.6
997,813 - lipA DVU0905 0.37 -1.3
997,813 - lipA DVU0905 0.37 -1.2
997,879 - lipA DVU0905 0.45 -1.5
997,907 - lipA DVU0905 0.48 -1.3
997,968 + lipA DVU0905 0.55 -1.8
997,976 - lipA DVU0905 0.55 -1.5
997,986 - lipA DVU0905 0.57 -0.8
997,986 - lipA DVU0905 0.57 -1.5
998,021 - lipA DVU0905 0.60 -1.6
998,069 + lipA DVU0905 0.66 -1.4
998,252 - lipA DVU0905 0.86 +0.8
998,264 - lipA DVU0905 0.88 -1.6
998,277 - lipA DVU0905 0.89 -1.6
998,277 - lipA DVU0905 0.89 -2.1
998,277 - lipA DVU0905 0.89 -0.4
998,383 - lipB DVU0906 0.12 -1.6
998,554 - lipB DVU0906 0.38 -1.7
998,587 + lipB DVU0906 0.43 -1.0
998,601 + lipB DVU0906 0.45 -0.6
998,859 + lipB DVU0906 0.84 -1.0
998,923 - -0.4
998,927 + -1.8
999,021 + -0.7
999,039 + -0.1
999,051 + -0.3
999,116 + +0.8
999,124 - -0.2
999,182 - -0.1

Or see this region's nucleotide sequence