Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21625

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21610 and RALBFv3_RS21615 are separated by 39 nucleotidesRALBFv3_RS21615 and RALBFv3_RS21620 are separated by 59 nucleotidesRALBFv3_RS21620 and RALBFv3_RS21625 are separated by 56 nucleotidesRALBFv3_RS21625 and RALBFv3_RS24655 are separated by 2 nucleotidesRALBFv3_RS24655 and RALBFv3_RS21630 are separated by 12 nucleotides RALBFv3_RS21610: RALBFv3_RS21610 - MarR family transcriptional regulator, at 1,578,070 to 1,578,513 _RS21610 RALBFv3_RS21615: RALBFv3_RS21615 - flagellar protein FliT, at 1,578,553 to 1,578,909 _RS21615 RALBFv3_RS21620: RALBFv3_RS21620 - flagellar export chaperone FliS, at 1,578,969 to 1,579,397 _RS21620 RALBFv3_RS21625: RALBFv3_RS21625 - flagellar hook protein FliD, at 1,579,454 to 1,581,511 _RS21625 RALBFv3_RS24655: RALBFv3_RS24655 - hypothetical protein, at 1,581,514 to 1,581,693 _RS24655 RALBFv3_RS21630: RALBFv3_RS21630 - flagellin, at 1,581,706 to 1,582,527 _RS21630 Position (kb) 1579 1580 1581 1582Strain fitness (log2 ratio) -2 -1 0 1 2at 1578.555 kb on - strandat 1578.576 kb on - strandat 1578.616 kb on - strand, within RALBFv3_RS21615at 1578.757 kb on - strand, within RALBFv3_RS21615at 1578.757 kb on - strand, within RALBFv3_RS21615at 1578.757 kb on - strand, within RALBFv3_RS21615at 1578.764 kb on + strand, within RALBFv3_RS21615at 1578.764 kb on + strand, within RALBFv3_RS21615at 1578.765 kb on - strand, within RALBFv3_RS21615at 1578.789 kb on + strand, within RALBFv3_RS21615at 1578.789 kb on + strand, within RALBFv3_RS21615at 1578.789 kb on + strand, within RALBFv3_RS21615at 1578.790 kb on - strand, within RALBFv3_RS21615at 1578.860 kb on + strand, within RALBFv3_RS21615at 1578.860 kb on + strand, within RALBFv3_RS21615at 1578.861 kb on - strand, within RALBFv3_RS21615at 1578.861 kb on - strand, within RALBFv3_RS21615at 1578.861 kb on - strand, within RALBFv3_RS21615at 1578.861 kb on - strand, within RALBFv3_RS21615at 1579.123 kb on + strand, within RALBFv3_RS21620at 1579.124 kb on - strand, within RALBFv3_RS21620at 1579.124 kb on - strand, within RALBFv3_RS21620at 1579.124 kb on - strand, within RALBFv3_RS21620at 1579.129 kb on + strand, within RALBFv3_RS21620at 1579.130 kb on - strand, within RALBFv3_RS21620at 1579.130 kb on - strand, within RALBFv3_RS21620at 1579.130 kb on - strand, within RALBFv3_RS21620at 1579.136 kb on + strand, within RALBFv3_RS21620at 1579.137 kb on - strand, within RALBFv3_RS21620at 1579.366 kb on + strandat 1579.367 kb on - strandat 1579.393 kb on + strandat 1579.393 kb on + strandat 1579.394 kb on - strandat 1579.394 kb on - strandat 1579.394 kb on - strandat 1579.423 kb on + strandat 1579.510 kb on - strandat 1579.510 kb on - strandat 1579.510 kb on - strandat 1579.566 kb on + strandat 1579.567 kb on - strandat 1579.567 kb on - strandat 1579.569 kb on + strandat 1579.569 kb on + strandat 1579.570 kb on - strandat 1579.607 kb on - strandat 1579.720 kb on - strand, within RALBFv3_RS21625at 1579.742 kb on - strand, within RALBFv3_RS21625at 1580.079 kb on + strand, within RALBFv3_RS21625at 1580.080 kb on - strand, within RALBFv3_RS21625at 1580.080 kb on - strand, within RALBFv3_RS21625at 1580.080 kb on - strand, within RALBFv3_RS21625at 1580.080 kb on - strand, within RALBFv3_RS21625at 1580.226 kb on + strand, within RALBFv3_RS21625at 1580.226 kb on + strand, within RALBFv3_RS21625at 1580.227 kb on - strand, within RALBFv3_RS21625at 1580.227 kb on - strand, within RALBFv3_RS21625at 1580.415 kb on + strand, within RALBFv3_RS21625at 1580.416 kb on - strand, within RALBFv3_RS21625at 1581.030 kb on + strand, within RALBFv3_RS21625at 1581.030 kb on + strand, within RALBFv3_RS21625at 1581.030 kb on + strand, within RALBFv3_RS21625at 1581.031 kb on - strand, within RALBFv3_RS21625at 1581.180 kb on + strand, within RALBFv3_RS21625at 1581.180 kb on + strand, within RALBFv3_RS21625at 1581.180 kb on + strand, within RALBFv3_RS21625at 1581.181 kb on - strand, within RALBFv3_RS21625at 1581.181 kb on - strand, within RALBFv3_RS21625at 1581.181 kb on - strand, within RALBFv3_RS21625at 1581.349 kb on - strandat 1581.584 kb on - strand, within RALBFv3_RS24655at 1581.584 kb on - strand, within RALBFv3_RS24655at 1581.585 kb on - strand, within RALBFv3_RS24655at 1581.707 kb on + strandat 1581.708 kb on - strandat 1581.821 kb on + strand, within RALBFv3_RS21630at 1581.821 kb on + strand, within RALBFv3_RS21630at 1581.822 kb on - strand, within RALBFv3_RS21630at 1582.133 kb on + strand, within RALBFv3_RS21630at 1582.133 kb on + strand, within RALBFv3_RS21630at 1582.133 kb on + strand, within RALBFv3_RS21630at 1582.181 kb on + strand, within RALBFv3_RS21630at 1582.181 kb on + strand, within RALBFv3_RS21630at 1582.181 kb on + strand, within RALBFv3_RS21630at 1582.181 kb on + strand, within RALBFv3_RS21630at 1582.182 kb on - strand, within RALBFv3_RS21630at 1582.254 kb on + strand, within RALBFv3_RS21630at 1582.254 kb on + strand, within RALBFv3_RS21630at 1582.254 kb on + strand, within RALBFv3_RS21630at 1582.254 kb on + strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.255 kb on - strand, within RALBFv3_RS21630at 1582.286 kb on + strand, within RALBFv3_RS21630at 1582.286 kb on + strand, within RALBFv3_RS21630at 1582.286 kb on + strand, within RALBFv3_RS21630at 1582.307 kb on + strand, within RALBFv3_RS21630at 1582.335 kb on + strand, within RALBFv3_RS21630at 1582.336 kb on - strand, within RALBFv3_RS21630at 1582.386 kb on - strand, within RALBFv3_RS21630at 1582.386 kb on - strand, within RALBFv3_RS21630at 1582.386 kb on - strand, within RALBFv3_RS21630at 1582.422 kb on + strand, within RALBFv3_RS21630

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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1,578,555 - -1.0
1,578,576 - +1.3
1,578,616 - RALBFv3_RS21615 0.18 +0.0
1,578,757 - RALBFv3_RS21615 0.57 -0.3
1,578,757 - RALBFv3_RS21615 0.57 -0.2
1,578,757 - RALBFv3_RS21615 0.57 -0.3
1,578,764 + RALBFv3_RS21615 0.59 +0.1
1,578,764 + RALBFv3_RS21615 0.59 +1.9
1,578,765 - RALBFv3_RS21615 0.59 -0.4
1,578,789 + RALBFv3_RS21615 0.66 +0.6
1,578,789 + RALBFv3_RS21615 0.66 -1.1
1,578,789 + RALBFv3_RS21615 0.66 -0.1
1,578,790 - RALBFv3_RS21615 0.66 -0.5
1,578,860 + RALBFv3_RS21615 0.86 -1.4
1,578,860 + RALBFv3_RS21615 0.86 +0.4
1,578,861 - RALBFv3_RS21615 0.86 -0.2
1,578,861 - RALBFv3_RS21615 0.86 -0.7
1,578,861 - RALBFv3_RS21615 0.86 +0.3
1,578,861 - RALBFv3_RS21615 0.86 -1.8
1,579,123 + RALBFv3_RS21620 0.36 -0.1
1,579,124 - RALBFv3_RS21620 0.36 +0.6
1,579,124 - RALBFv3_RS21620 0.36 -0.4
1,579,124 - RALBFv3_RS21620 0.36 -0.6
1,579,129 + RALBFv3_RS21620 0.37 -0.3
1,579,130 - RALBFv3_RS21620 0.38 -1.3
1,579,130 - RALBFv3_RS21620 0.38 -0.8
1,579,130 - RALBFv3_RS21620 0.38 -0.9
1,579,136 + RALBFv3_RS21620 0.39 +0.0
1,579,137 - RALBFv3_RS21620 0.39 -0.3
1,579,366 + -1.1
1,579,367 - +1.9
1,579,393 + -0.1
1,579,393 + -0.7
1,579,394 - -0.4
1,579,394 - +0.3
1,579,394 - -0.5
1,579,423 + +0.1
1,579,510 - +0.2
1,579,510 - +0.0
1,579,510 - -0.3
1,579,566 + +1.2
1,579,567 - -0.6
1,579,567 - -0.0
1,579,569 + -0.2
1,579,569 + +0.6
1,579,570 - +0.7
1,579,607 - -0.6
1,579,720 - RALBFv3_RS21625 0.13 +0.3
1,579,742 - RALBFv3_RS21625 0.14 -0.9
1,580,079 + RALBFv3_RS21625 0.30 +0.5
1,580,080 - RALBFv3_RS21625 0.30 +1.5
1,580,080 - RALBFv3_RS21625 0.30 -1.2
1,580,080 - RALBFv3_RS21625 0.30 -0.9
1,580,080 - RALBFv3_RS21625 0.30 +0.9
1,580,226 + RALBFv3_RS21625 0.38 -0.4
1,580,226 + RALBFv3_RS21625 0.38 +0.1
1,580,227 - RALBFv3_RS21625 0.38 +0.2
1,580,227 - RALBFv3_RS21625 0.38 -0.3
1,580,415 + RALBFv3_RS21625 0.47 -0.6
1,580,416 - RALBFv3_RS21625 0.47 -0.6
1,581,030 + RALBFv3_RS21625 0.77 -1.6
1,581,030 + RALBFv3_RS21625 0.77 -0.2
1,581,030 + RALBFv3_RS21625 0.77 -1.2
1,581,031 - RALBFv3_RS21625 0.77 -0.7
1,581,180 + RALBFv3_RS21625 0.84 +1.9
1,581,180 + RALBFv3_RS21625 0.84 -0.8
1,581,180 + RALBFv3_RS21625 0.84 -0.8
1,581,181 - RALBFv3_RS21625 0.84 -1.5
1,581,181 - RALBFv3_RS21625 0.84 -0.0
1,581,181 - RALBFv3_RS21625 0.84 +0.9
1,581,349 - -1.5
1,581,584 - RALBFv3_RS24655 0.39 +0.7
1,581,584 - RALBFv3_RS24655 0.39 -0.4
1,581,585 - RALBFv3_RS24655 0.39 -0.1
1,581,707 + -0.2
1,581,708 - -0.3
1,581,821 + RALBFv3_RS21630 0.14 +0.4
1,581,821 + RALBFv3_RS21630 0.14 -0.4
1,581,822 - RALBFv3_RS21630 0.14 -0.9
1,582,133 + RALBFv3_RS21630 0.52 +0.2
1,582,133 + RALBFv3_RS21630 0.52 -1.6
1,582,133 + RALBFv3_RS21630 0.52 -0.1
1,582,181 + RALBFv3_RS21630 0.58 -0.5
1,582,181 + RALBFv3_RS21630 0.58 +0.9
1,582,181 + RALBFv3_RS21630 0.58 +0.3
1,582,181 + RALBFv3_RS21630 0.58 -0.1
1,582,182 - RALBFv3_RS21630 0.58 +0.6
1,582,254 + RALBFv3_RS21630 0.67 +0.1
1,582,254 + RALBFv3_RS21630 0.67 -0.5
1,582,254 + RALBFv3_RS21630 0.67 -2.1
1,582,254 + RALBFv3_RS21630 0.67 -0.4
1,582,255 - RALBFv3_RS21630 0.67 -0.5
1,582,255 - RALBFv3_RS21630 0.67 +0.7
1,582,255 - RALBFv3_RS21630 0.67 +2.2
1,582,255 - RALBFv3_RS21630 0.67 -1.4
1,582,255 - RALBFv3_RS21630 0.67 +0.2
1,582,255 - RALBFv3_RS21630 0.67 +0.1
1,582,286 + RALBFv3_RS21630 0.71 -1.6
1,582,286 + RALBFv3_RS21630 0.71 -1.5
1,582,286 + RALBFv3_RS21630 0.71 -1.0
1,582,307 + RALBFv3_RS21630 0.73 -0.3
1,582,335 + RALBFv3_RS21630 0.77 -0.1
1,582,336 - RALBFv3_RS21630 0.77 -0.2
1,582,386 - RALBFv3_RS21630 0.83 -0.1
1,582,386 - RALBFv3_RS21630 0.83 -0.8
1,582,386 - RALBFv3_RS21630 0.83 +1.9
1,582,422 + RALBFv3_RS21630 0.87 -1.0

Or see this region's nucleotide sequence