Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24335 and RALBFv3_RS18065 are separated by 89 nucleotides RALBFv3_RS18065 and RALBFv3_RS18070 are separated by 316 nucleotides RALBFv3_RS18070 and RALBFv3_RS18075 are separated by 84 nucleotides
RALBFv3_RS24335: RALBFv3_RS24335 - hypothetical protein, at 573,806 to 574,368
_RS24335
RALBFv3_RS18065: RALBFv3_RS18065 - entericidin, EcnA/B family, at 574,458 to 574,598
_RS18065
RALBFv3_RS18070: RALBFv3_RS18070 - methyl-accepting chemotaxis protein, at 574,915 to 576,483
_RS18070
RALBFv3_RS18075: RALBFv3_RS18075 - GGDEF domain-containing protein, at 576,568 to 577,980
_RS18075
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -1
0
1 at 573.963 kb on + strand, within RALBFv3_RS24335 at 573.963 kb on + strand, within RALBFv3_RS24335 at 573.964 kb on - strand, within RALBFv3_RS24335 at 574.145 kb on - strand, within RALBFv3_RS24335 at 574.286 kb on - strand, within RALBFv3_RS24335 at 574.367 kb on - strand at 574.459 kb on + strand at 574.460 kb on - strand at 574.460 kb on - strand at 574.460 kb on - strand at 574.617 kb on - strand at 574.699 kb on - strand at 574.819 kb on + strand at 574.819 kb on + strand at 574.819 kb on + strand at 574.819 kb on + strand at 574.820 kb on - strand at 575.395 kb on + strand, within RALBFv3_RS18070 at 575.396 kb on - strand, within RALBFv3_RS18070 at 575.437 kb on + strand, within RALBFv3_RS18070 at 575.473 kb on + strand, within RALBFv3_RS18070 at 575.473 kb on + strand at 576.612 kb on + strand at 576.654 kb on - strand at 576.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 573,963 + RALBFv3_RS24335 0.28 +0.1 573,963 + RALBFv3_RS24335 0.28 +0.0 573,964 - RALBFv3_RS24335 0.28 -1.4 574,145 - RALBFv3_RS24335 0.60 +0.9 574,286 - RALBFv3_RS24335 0.85 -1.0 574,367 - +0.0 574,459 + -1.2 574,460 - -0.5 574,460 - +1.1 574,460 - +0.9 574,617 - -0.5 574,699 - +0.6 574,819 + -0.1 574,819 + +0.1 574,819 + -0.4 574,819 + -0.2 574,820 - +0.1 575,395 + RALBFv3_RS18070 0.31 -0.4 575,396 - RALBFv3_RS18070 0.31 +0.4 575,437 + RALBFv3_RS18070 0.33 +0.1 575,473 + RALBFv3_RS18070 0.36 +0.6 575,473 + +0.8 576,612 + +0.3 576,654 - +0.5 576,654 - -1.6
Or see this region's nucleotide sequence