Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05265 and RALBFv3_RS05270 are separated by 2 nucleotides RALBFv3_RS05270 and RALBFv3_RS05275 are separated by 39 nucleotides RALBFv3_RS05275 and RALBFv3_RS05280 are separated by 83 nucleotides
RALBFv3_RS05265: RALBFv3_RS05265 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 1,164,791 to 1,165,864
_RS05265
RALBFv3_RS05270: RALBFv3_RS05270 - metal-binding protein, at 1,165,867 to 1,166,139
_RS05270
RALBFv3_RS05275: RALBFv3_RS05275 - hypothetical protein, at 1,166,179 to 1,166,601
_RS05275
RALBFv3_RS05280: RALBFv3_RS05280 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,166,685 to 1,167,755
_RS05280
Position (kb) 1166
1167 Strain fitness (log2 ratio) -1
0
1 at 1165.199 kb on + strand, within RALBFv3_RS05265 at 1165.271 kb on + strand, within RALBFv3_RS05265 at 1165.271 kb on + strand, within RALBFv3_RS05265 at 1165.272 kb on - strand, within RALBFv3_RS05265 at 1165.304 kb on + strand, within RALBFv3_RS05265 at 1165.304 kb on + strand, within RALBFv3_RS05265 at 1165.304 kb on + strand, within RALBFv3_RS05265 at 1165.305 kb on - strand, within RALBFv3_RS05265 at 1165.632 kb on + strand, within RALBFv3_RS05265 at 1165.632 kb on + strand, within RALBFv3_RS05265 at 1166.011 kb on + strand, within RALBFv3_RS05270 at 1166.098 kb on + strand, within RALBFv3_RS05270 at 1166.099 kb on - strand, within RALBFv3_RS05270 at 1166.099 kb on - strand, within RALBFv3_RS05270 at 1166.116 kb on - strand at 1166.386 kb on + strand, within RALBFv3_RS05275 at 1166.387 kb on - strand, within RALBFv3_RS05275 at 1166.600 kb on - strand at 1166.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 1,165,199 + RALBFv3_RS05265 0.38 -1.1 1,165,271 + RALBFv3_RS05265 0.45 -0.1 1,165,271 + RALBFv3_RS05265 0.45 -0.5 1,165,272 - RALBFv3_RS05265 0.45 +0.3 1,165,304 + RALBFv3_RS05265 0.48 -0.0 1,165,304 + RALBFv3_RS05265 0.48 -1.3 1,165,304 + RALBFv3_RS05265 0.48 -0.2 1,165,305 - RALBFv3_RS05265 0.48 -0.2 1,165,632 + RALBFv3_RS05265 0.78 +0.1 1,165,632 + RALBFv3_RS05265 0.78 -0.3 1,166,011 + RALBFv3_RS05270 0.53 +0.2 1,166,098 + RALBFv3_RS05270 0.85 -1.0 1,166,099 - RALBFv3_RS05270 0.85 -0.8 1,166,099 - RALBFv3_RS05270 0.85 -0.3 1,166,116 - +0.0 1,166,386 + RALBFv3_RS05275 0.49 +0.1 1,166,387 - RALBFv3_RS05275 0.49 +0.8 1,166,600 - -0.3 1,166,626 - +0.0
Or see this region's nucleotide sequence