Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4957
Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A |
|---|---|---|---|---|---|
| remove | |||||
| 5,496,007 | + | Pf1N1B4_4956 | 0.12 | -0.0 | |
| 5,496,008 | - | Pf1N1B4_4956 | 0.12 | -0.0 | |
| 5,496,325 | - | Pf1N1B4_4956 | 0.47 | -0.0 | |
| 5,496,325 | - | Pf1N1B4_4956 | 0.47 | -1.3 | |
| 5,496,334 | + | -0.0 | |||
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -0.0 | |
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -2.8 | |
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -0.0 | |
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -0.0 | |
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -2.4 | |
| 5,496,334 | + | Pf1N1B4_4956 | 0.48 | -0.0 | |
| 5,496,334 | + | -0.6 | |||
| 5,496,335 | - | Pf1N1B4_4956 | 0.48 | -0.0 | |
| 5,496,557 | + | Pf1N1B4_4956 | 0.73 | -0.0 | |
| 5,496,558 | - | Pf1N1B4_4956 | 0.73 | -2.2 | |
| 5,496,558 | - | Pf1N1B4_4956 | 0.73 | -0.0 | |
| 5,496,591 | - | Pf1N1B4_4956 | 0.77 | -1.9 | |
| 5,496,661 | - | Pf1N1B4_4956 | 0.85 | -1.8 | |
| 5,497,055 | + | -2.1 | |||
| 5,497,056 | - | Pf1N1B4_4957 | 0.24 | -2.3 | |
| 5,497,203 | - | -2.1 | |||
| 5,497,292 | - | Pf1N1B4_4957 | 0.62 | -0.0 | |
| 5,497,383 | - | Pf1N1B4_4957 | 0.76 | -0.0 | |
| 5,497,532 | - | -1.3 | |||
| 5,497,650 | + | -0.0 | |||
| 5,497,714 | + | +1.3 |
Or see this region's nucleotide sequence