Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4402

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
4,860,596	+		Pf1N1B4_4401	0.13	-0.1
4,860,596	+		Pf1N1B4_4401	0.13	-2.1
4,860,597	-				-1.2
4,860,733	-				-0.1
4,860,840	-		Pf1N1B4_4401	0.42	-2.2
4,860,965	+		Pf1N1B4_4401	0.57	-0.1
4,861,098	+		Pf1N1B4_4401	0.73	-0.9
4,861,098	+		Pf1N1B4_4401	0.73	-0.1
4,861,099	-		Pf1N1B4_4401	0.73	-0.1
4,861,099	-		Pf1N1B4_4401	0.73	-0.1
4,861,309	+				-0.7
4,861,309	+				-0.1
4,861,313	-				-0.1
4,861,360	+				-0.1
4,861,360	+				-0.2
4,861,360	+				-1.9
4,861,361	-				-0.9
4,861,361	-				-0.1
4,861,469	+				-0.1
4,861,469	+				-0.1
4,861,470	-				-0.1
4,861,470	-				-0.1
4,861,470	-				-0.1
4,861,470	-				-0.1
4,861,470	-				-0.1
4,861,470	-				+0.3
4,861,470	-				-0.1
4,861,575	-				-0.1
4,861,824	-		Pf1N1B4_4402	0.28	-2.4
4,861,824	-		Pf1N1B4_4402	0.28	-1.1
4,861,889	+		Pf1N1B4_4402	0.36	-2.4
4,861,890	-				-1.0
4,861,922	+		Pf1N1B4_4402	0.39	-1.9
4,862,260	+		Pf1N1B4_4402	0.77	-2.5
4,862,550	+				-0.1
4,862,551	-				-0.1
4,862,551	-				-1.1
4,862,777	-		Pf1N1B4_4403	0.15	-0.8
4,862,933	-		Pf1N1B4_4403	0.27	-1.7
4,863,149	-		Pf1N1B4_4403	0.45	-4.0