Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4051

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
4,501,709	-				-1.5
4,501,709	-		Pf1N1B4_4049	0.13	-0.9
4,501,806	+		Pf1N1B4_4049	0.35	+0.0
4,501,854	+		Pf1N1B4_4049	0.46	-1.2
4,501,854	+		Pf1N1B4_4049	0.46	+0.0
4,501,855	-		Pf1N1B4_4049	0.46	-1.2
4,501,881	+		Pf1N1B4_4049	0.52	+0.0
4,501,881	+		Pf1N1B4_4049	0.52	+0.0
4,501,881	+		Pf1N1B4_4049	0.52	-1.4
4,501,887	+				-3.4
4,501,887	+		Pf1N1B4_4049	0.53	+0.0
4,501,887	+		Pf1N1B4_4049	0.53	-2.0
4,501,887	+		Pf1N1B4_4049	0.53	+0.0
4,501,887	+		Pf1N1B4_4049	0.53	-0.7
4,502,239	+				-2.4
4,502,239	+				-1.7
4,502,240	-				-1.7
4,502,240	-				-0.6
4,502,240	-				-1.0
4,502,240	-				-3.0
4,502,240	-				-0.9
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,240	-				-0.8
4,502,240	-				+0.0
4,502,240	-				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				-1.0
4,502,243	+				-2.3
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				+0.0
4,502,243	+				-1.0
4,502,243	+				+0.0
4,502,244	-				+0.0
4,502,244	-				-1.1
4,502,244	-				+0.0
4,502,244	-				+0.0
4,502,244	-				-0.3
4,502,247	+				+0.0
4,502,247	+				+0.0
4,502,247	+				-1.7
4,502,247	+				+0.0
4,502,248	-				-2.8
4,502,248	-				-2.0
4,502,302	+				+0.0
4,502,310	+				-1.3
4,502,551	-				+0.0
4,502,663	-				+0.0
4,502,673	+		Pf1N1B4_4051	0.10	-1.6
4,502,674	-		Pf1N1B4_4051	0.10	-2.0
4,502,674	-		Pf1N1B4_4051	0.10	+0.0
4,502,678	-		Pf1N1B4_4051	0.10	+0.0
4,503,004	-		Pf1N1B4_4051	0.26	+0.0
4,503,020	+		Pf1N1B4_4051	0.27	+0.0
4,503,020	+		Pf1N1B4_4051	0.27	+0.0
4,503,389	+		Pf1N1B4_4051	0.45	-1.0
4,503,566	+		Pf1N1B4_4051	0.53	-2.0
4,503,625	-		Pf1N1B4_4051	0.56	-2.8
4,503,710	+		Pf1N1B4_4051	0.60	+1.0
4,504,073	+		Pf1N1B4_4051	0.78	+0.0
4,504,073	+		Pf1N1B4_4051	0.78	+0.0
4,504,472	+				-2.5
4,504,472	+				+0.0
4,504,472	+				+0.0
4,504,506	+				-1.8
4,504,506	+				-3.0
4,504,508	+				-0.3
4,504,508	+				-1.0
4,504,560	+				+0.0
4,504,692	-				+0.0
4,504,727	+				-1.5
4,504,769	+				+0.0
4,504,770	-				-1.6
4,504,771	+				+0.0
4,504,771	+				+0.0
4,504,771	+				+0.0
4,504,771	+				-0.3
4,504,771	+				+0.0
4,504,771	+				-1.1
4,504,771	+				-2.3
4,504,771	+				+0.0
4,504,771	+				+0.0
4,504,771	+				-1.1
4,504,771	+				+0.0
4,504,771	+				-0.8
4,504,771	+				+0.0
4,504,771	+				-1.8
4,504,771	+				-1.7
4,504,771	+				+0.0
4,504,771	+				+0.0
4,504,772	-				+0.0
4,504,772	-				-1.1
4,504,772	-				-1.1
4,504,772	-				+0.0
4,504,772	-				+0.0
4,504,772	-				+0.0
4,504,775	+				-2.5
4,504,775	+				+0.0
4,504,775	+				+0.0
4,504,775	+				-1.5
4,504,775	+				+0.0
4,504,775	+				-1.6
4,504,775	+				-1.3
4,504,775	+				-0.9
4,504,776	-				+0.0
4,504,776	-				+0.0
4,504,776	-				-3.1
4,504,776	-				+0.0
4,504,776	-				-3.5
4,504,776	-				+0.0
4,504,776	-				-2.2
4,504,780	-				+0.0
4,504,805	-				-3.2
4,504,805	-				+0.0
4,504,805	-				+0.0
4,504,830	+				+0.0
4,504,830	+				+0.0
4,504,830	+				+0.0
4,504,856	+				-2.5
4,504,856	+				-2.8
4,504,910	+				-3.4
4,504,910	+				-1.4
4,504,911	-				-3.8
4,504,911	-				-2.5
4,504,911	-				-1.8
4,504,911	-				-1.5
4,504,911	-				-0.6
4,504,911	-				-2.2
4,504,952	+				+0.0
4,504,952	+				+0.0
4,504,952	+				+0.0
4,504,952	+				+0.0
4,504,952	+				+0.0
4,504,953	-				-1.4
4,504,971	+				+0.0
4,504,972	-				-3.9
4,504,972	-				+0.4
4,504,981	-				+0.0
4,505,022	-				+0.0
4,505,022	-				-2.2
4,505,022	-				+0.0
4,505,140	+				-2.1
4,505,141	-				-1.9
4,505,153	-		Pf1N1B4_4052	0.10	+0.0
4,505,237	+		Pf1N1B4_4052	0.17	-1.3
4,505,315	+		Pf1N1B4_4052	0.23	+0.0
4,505,315	+		Pf1N1B4_4052	0.23	-1.4
4,505,315	+		Pf1N1B4_4052	0.23	-1.8
4,505,315	+		Pf1N1B4_4052	0.23	+0.0
4,505,316	-		Pf1N1B4_4052	0.23	+0.0
4,505,316	-		Pf1N1B4_4052	0.23	-1.8
4,505,319	+		Pf1N1B4_4052	0.23	+0.0
4,505,319	+		Pf1N1B4_4052	0.23	-2.4
4,505,319	+				-1.6
4,505,320	-		Pf1N1B4_4052	0.23	+0.0
4,505,405	+		Pf1N1B4_4052	0.30	+0.0
4,505,405	+		Pf1N1B4_4052	0.30	+0.0
4,505,405	+		Pf1N1B4_4052	0.30	+0.0
4,505,405	+		Pf1N1B4_4052	0.30	+0.0
4,505,405	+		Pf1N1B4_4052	0.30	-2.8
4,505,405	+				-1.0
4,505,406	-		Pf1N1B4_4052	0.30	+0.0
4,505,406	-		Pf1N1B4_4052	0.30	+0.0
4,505,510	+		Pf1N1B4_4052	0.38	+0.0
4,505,510	+		Pf1N1B4_4052	0.38	-3.5
4,505,510	+		Pf1N1B4_4052	0.38	+0.0
4,505,511	-				-0.8