Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3881

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
4,309,135	+		Pf1N1B4_3879	0.70	+0.0
4,309,135	+		Pf1N1B4_3879	0.70	-2.4
4,309,135	+		Pf1N1B4_3879	0.70	-3.5
4,309,135	+		Pf1N1B4_3879	0.70	-3.8
4,309,135	+		Pf1N1B4_3879	0.70	+0.0
4,309,136	-		Pf1N1B4_3879	0.70	-1.5
4,309,136	-		Pf1N1B4_3879	0.70	-1.5
4,309,136	-		Pf1N1B4_3879	0.70	+0.0
4,309,136	-		Pf1N1B4_3879	0.70	+0.0
4,309,145	+		Pf1N1B4_3879	0.71	+0.0
4,309,146	-		Pf1N1B4_3879	0.71	-3.6
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	-3.3
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.8
4,309,153	+				-3.4
4,309,153	+		Pf1N1B4_3879	0.71	-2.9
4,309,153	+		Pf1N1B4_3879	0.71	-4.4
4,309,153	+		Pf1N1B4_3879	0.71	-3.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.5
4,309,153	+		Pf1N1B4_3879	0.71	-3.0
4,309,153	+		Pf1N1B4_3879	0.71	-2.3
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	-1.9
4,309,154	-		Pf1N1B4_3879	0.71	-1.7
4,309,154	-		Pf1N1B4_3879	0.71	-4.0
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	-2.5
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	-3.9
4,309,154	-		Pf1N1B4_3879	0.71	+0.0
4,309,154	-		Pf1N1B4_3879	0.71	-4.8
4,309,154	-		Pf1N1B4_3879	0.71	-1.2
4,309,204	+		Pf1N1B4_3879	0.75	+0.0
4,309,204	+		Pf1N1B4_3879	0.75	-3.6
4,309,204	+		Pf1N1B4_3879	0.75	+0.0
4,309,204	+				-3.9
4,309,204	+		Pf1N1B4_3879	0.75	-2.0
4,309,204	+		Pf1N1B4_3879	0.75	+0.0
4,309,204	+		Pf1N1B4_3879	0.75	+0.0
4,309,205	-		Pf1N1B4_3879	0.75	+0.0
4,309,205	-		Pf1N1B4_3879	0.75	-2.7
4,309,205	-		Pf1N1B4_3879	0.75	-3.6
4,309,205	-		Pf1N1B4_3879	0.75	+0.0
4,309,205	-		Pf1N1B4_3879	0.75	+0.0
4,309,205	-		Pf1N1B4_3879	0.75	+0.0
4,309,205	-		Pf1N1B4_3879	0.75	+0.0
4,309,390	+		Pf1N1B4_3879	0.89	-2.7
4,309,390	+		Pf1N1B4_3879	0.89	+0.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.0
4,309,390	+		Pf1N1B4_3879	0.89	-4.1
4,309,390	+				+1.0
4,309,390	+		Pf1N1B4_3879	0.89	-1.6
4,309,390	+		Pf1N1B4_3879	0.89	-3.6
4,309,390	+		Pf1N1B4_3879	0.89	-1.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.0
4,309,390	+		Pf1N1B4_3879	0.89	-4.1
4,309,390	+		Pf1N1B4_3879	0.89	+0.0
4,309,391	-		Pf1N1B4_3879	0.89	-3.2
4,309,391	-		Pf1N1B4_3879	0.89	-2.2
4,309,391	-		Pf1N1B4_3879	0.89	-2.0
4,309,391	-		Pf1N1B4_3879	0.89	+0.0
4,309,391	-		Pf1N1B4_3879	0.89	+0.0
4,309,391	-		Pf1N1B4_3879	0.89	+0.0
4,309,391	-		Pf1N1B4_3879	0.89	+0.0
4,309,391	-		Pf1N1B4_3879	0.89	-2.0
4,309,391	-				-0.3
4,309,391	-		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	-2.7
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	-2.8
4,309,393	+		Pf1N1B4_3879	0.89	-1.0
4,309,394	-		Pf1N1B4_3879	0.89	+0.0
4,309,394	-		Pf1N1B4_3879	0.89	-2.1
4,309,394	-				-3.5
4,309,588	-				+0.0
4,309,592	+		Pf1N1B4_3880	0.21	+0.0
4,309,592	+		Pf1N1B4_3880	0.21	+0.0
4,309,592	+		Pf1N1B4_3880	0.21	+0.0
4,309,593	-		Pf1N1B4_3880	0.21	+0.0
4,309,593	-		Pf1N1B4_3880	0.21	-4.6
4,309,593	-		Pf1N1B4_3880	0.21	-0.8
4,309,593	-		Pf1N1B4_3880	0.21	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	-1.6
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	-2.6
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.5
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,594	+		Pf1N1B4_3880	0.22	+0.0
4,309,595	-		Pf1N1B4_3880	0.22	+0.0
4,309,595	-		Pf1N1B4_3880	0.22	+0.0
4,309,595	-		Pf1N1B4_3880	0.22	-3.9
4,309,595	-		Pf1N1B4_3880	0.22	-3.3
4,309,595	-		Pf1N1B4_3880	0.22	-4.3
4,309,595	-		Pf1N1B4_3880	0.22	+0.0
4,309,595	-		Pf1N1B4_3880	0.22	+0.4
4,309,595	-		Pf1N1B4_3880	0.22	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	-2.1
4,309,598	+		Pf1N1B4_3880	0.23	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	-1.2
4,309,598	+		Pf1N1B4_3880	0.23	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	-2.1
4,309,598	+		Pf1N1B4_3880	0.23	-2.5
4,309,598	+		Pf1N1B4_3880	0.23	+0.0
4,309,598	+		Pf1N1B4_3880	0.23	-4.5
4,309,598	+		Pf1N1B4_3880	0.23	-0.6
4,309,599	-		Pf1N1B4_3880	0.23	+0.0
4,309,599	-		Pf1N1B4_3880	0.23	+0.0
4,309,599	-		Pf1N1B4_3880	0.23	+0.0
4,309,599	-		Pf1N1B4_3880	0.23	+0.0
4,309,599	-		Pf1N1B4_3880	0.23	+1.0
4,309,599	-		Pf1N1B4_3880	0.23	-1.3
4,309,599	-		Pf1N1B4_3880	0.23	-2.0
4,309,599	-		Pf1N1B4_3880	0.23	-1.1
4,309,599	-		Pf1N1B4_3880	0.23	-3.7
4,309,599	-		Pf1N1B4_3880	0.23	-1.6
4,309,600	+		Pf1N1B4_3880	0.23	+0.0
4,309,600	+		Pf1N1B4_3880	0.23	+0.0
4,309,600	+		Pf1N1B4_3880	0.23	+0.0
4,309,600	+		Pf1N1B4_3880	0.23	+0.0
4,309,600	+		Pf1N1B4_3880	0.23	-3.7
4,309,600	+		Pf1N1B4_3880	0.23	+0.0
4,309,600	+		Pf1N1B4_3880	0.23	-4.5
4,309,601	-		Pf1N1B4_3880	0.23	+0.0
4,309,601	-		Pf1N1B4_3880	0.23	-2.0
4,309,631	+		Pf1N1B4_3880	0.31	+0.0
4,309,632	-				+0.0
4,309,632	-		Pf1N1B4_3880	0.31	-2.5
4,309,655	+		Pf1N1B4_3880	0.38	-2.3
4,309,655	+		Pf1N1B4_3880	0.38	+0.0
4,309,658	+		Pf1N1B4_3880	0.38	+0.0
4,309,658	+		Pf1N1B4_3880	0.38	+0.0
4,309,658	+		Pf1N1B4_3880	0.38	+0.0
4,309,659	-		Pf1N1B4_3880	0.39	+0.0
4,309,659	-		Pf1N1B4_3880	0.39	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	-3.2
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	-2.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,681	+		Pf1N1B4_3880	0.44	-2.0
4,309,681	+		Pf1N1B4_3880	0.44	+0.0
4,309,682	-		Pf1N1B4_3880	0.45	+0.0
4,309,682	-		Pf1N1B4_3880	0.45	+0.0
4,309,682	-				+0.0
4,309,685	+		Pf1N1B4_3880	0.45	-3.7
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	-1.4
4,309,685	+		Pf1N1B4_3880	0.45	-2.3
4,309,685	+		Pf1N1B4_3880	0.45	+0.0
4,309,685	+		Pf1N1B4_3880	0.45	-2.0
4,309,720	+		Pf1N1B4_3880	0.55	+0.0
4,309,720	+		Pf1N1B4_3880	0.55	+0.0
4,309,720	+		Pf1N1B4_3880	0.55	-1.9
4,309,720	+		Pf1N1B4_3880	0.55	-2.0
4,309,720	+		Pf1N1B4_3880	0.55	+0.0
4,309,720	+		Pf1N1B4_3880	0.55	-0.8
4,309,721	-		Pf1N1B4_3880	0.55	+0.0
4,309,721	-		Pf1N1B4_3880	0.55	+0.0
4,310,000	-				+0.0
4,310,000	-				-1.6
4,310,098	-				+0.0
4,310,147	+				-4.2
4,310,147	+				+0.0
4,310,171	-				+0.0
4,310,171	-				-2.7
4,310,171	-				+0.0
4,310,176	+				-0.8
4,310,176	+				+0.0
4,310,176	+				+0.0
4,310,176	+				+0.0
4,310,177	-				+0.0
4,310,177	-				+0.0
4,310,177	-				-2.4
4,310,177	-				+0.0
4,310,177	-				-1.3
4,310,177	-				+0.0
4,310,177	-				+0.0
4,310,177	-				+0.0
4,310,198	+				-4.6
4,310,198	+				+1.6
4,310,231	+		Pf1N1B4_3881	0.12	-1.7
4,310,232	-		Pf1N1B4_3881	0.13	+0.0
4,310,232	-		Pf1N1B4_3881	0.13	+0.0
4,310,282	+		Pf1N1B4_3881	0.18	+0.0
4,310,283	-		Pf1N1B4_3881	0.18	+0.0
4,310,283	-		Pf1N1B4_3881	0.18	+0.0
4,310,283	-		Pf1N1B4_3881	0.18	-3.9
4,310,283	-		Pf1N1B4_3881	0.18	-2.2
4,310,283	-		Pf1N1B4_3881	0.18	+0.0
4,310,287	+				+0.0
4,310,288	-		Pf1N1B4_3881	0.18	+0.0
4,310,288	-		Pf1N1B4_3881	0.18	-1.0
4,310,288	-		Pf1N1B4_3881	0.18	+0.0
4,310,288	-		Pf1N1B4_3881	0.18	-3.6
4,310,288	-		Pf1N1B4_3881	0.18	+0.0
4,310,288	-		Pf1N1B4_3881	0.18	+0.0
4,310,292	-		Pf1N1B4_3881	0.19	+0.0
4,310,292	-		Pf1N1B4_3881	0.19	-3.8
4,310,292	-		Pf1N1B4_3881	0.19	+0.0
4,310,292	-		Pf1N1B4_3881	0.19	-2.3
4,310,292	-		Pf1N1B4_3881	0.19	+0.0
4,310,292	-		Pf1N1B4_3881	0.19	-3.2
4,310,372	+		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	-3.9
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-				+0.0
4,310,373	-		Pf1N1B4_3881	0.27	-1.5
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	-4.3
4,310,373	-		Pf1N1B4_3881	0.27	-3.9
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	-2.2
4,310,373	-				+0.0
4,310,455	+		Pf1N1B4_3881	0.36	+0.0
4,310,455	+		Pf1N1B4_3881	0.36	+0.0
4,310,455	+		Pf1N1B4_3881	0.36	+0.0
4,310,455	+		Pf1N1B4_3881	0.36	-2.0
4,310,455	+		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	-2.7
4,310,456	-		Pf1N1B4_3881	0.36	-1.4
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	-2.4
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	-1.3
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	+0.0
4,310,456	-		Pf1N1B4_3881	0.36	-3.3
4,311,047	+				+0.5
4,311,048	-				+0.0
4,311,251	+				+0.0
4,311,252	-				+0.0
4,311,258	-				+0.0
4,311,325	-				+0.0
4,311,325	-				+0.0
4,311,397	-		Pf1N1B4_3883	0.19	-2.3
4,311,478	-		Pf1N1B4_3883	0.32	+0.0
4,311,519	+		Pf1N1B4_3883	0.39	+0.0
4,311,519	+		Pf1N1B4_3883	0.39	-2.0
4,311,520	-		Pf1N1B4_3883	0.39	+0.0
4,311,520	-		Pf1N1B4_3883	0.39	+0.0
4,311,520	-				-2.7
4,311,520	-		Pf1N1B4_3883	0.39	+0.0
4,311,639	+		Pf1N1B4_3883	0.58	+0.0
4,311,717	+		Pf1N1B4_3883	0.71	-4.9
4,311,717	+		Pf1N1B4_3883	0.71	-2.7
4,311,717	+		Pf1N1B4_3883	0.71	+0.0
4,311,717	+		Pf1N1B4_3883	0.71	+0.0
4,311,717	+		Pf1N1B4_3883	0.71	-3.5
4,311,717	+		Pf1N1B4_3883	0.71	+0.0
4,311,717	+		Pf1N1B4_3883	0.71	+0.0
4,311,718	-		Pf1N1B4_3883	0.71	+0.0
4,311,718	-		Pf1N1B4_3883	0.71	+0.0
4,311,750	+		Pf1N1B4_3883	0.77	-3.4
4,311,751	-		Pf1N1B4_3883	0.77	+0.0
4,311,970	+				-3.0
4,311,970	+				-2.1
4,311,971	-				-0.6
4,311,971	-				+0.0
4,311,971	-				+0.0