Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3580

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,989,576	+		Pf1N1B4_3578	0.63	-0.0
3,989,577	-		Pf1N1B4_3578	0.63	-0.0
3,989,595	-		Pf1N1B4_3578	0.64	-1.8
3,990,207	-		Pf1N1B4_3579	0.41	-2.6
3,990,378	+		Pf1N1B4_3579	0.72	-0.0
3,990,396	+		Pf1N1B4_3579	0.75	-5.4
3,990,532	+				-2.3
3,990,532	+				-0.0
3,990,608	+				-0.0
3,990,609	-				-0.0
3,990,609	-				-0.0
3,990,702	-		Pf1N1B4_3580	0.14	-2.8
3,990,786	-		Pf1N1B4_3580	0.21	-1.6
3,990,873	-		Pf1N1B4_3580	0.28	-0.0
3,990,873	-		Pf1N1B4_3580	0.28	-1.0
3,991,190	+		Pf1N1B4_3580	0.54	-1.9
3,991,190	+		Pf1N1B4_3580	0.54	-0.0
3,991,190	+		Pf1N1B4_3580	0.54	-1.6
3,991,190	+		Pf1N1B4_3580	0.54	-0.0
3,991,191	-		Pf1N1B4_3580	0.54	-0.0
3,991,417	+		Pf1N1B4_3580	0.72	-0.0
3,991,417	+		Pf1N1B4_3580	0.72	-0.0
3,991,417	+		Pf1N1B4_3580	0.72	-2.9
3,991,418	-		Pf1N1B4_3580	0.72	-0.0
3,991,517	+		Pf1N1B4_3580	0.80	-2.5
3,991,583	+		Pf1N1B4_3580	0.86	-0.0
3,991,583	+		Pf1N1B4_3580	0.86	-0.0
3,991,583	+		Pf1N1B4_3580	0.86	-2.6
3,991,583	+		Pf1N1B4_3580	0.86	-0.0
3,991,584	-		Pf1N1B4_3580	0.86	-0.0
3,991,584	-		Pf1N1B4_3580	0.86	-0.0
3,991,646	+				-1.9
3,991,646	+				-0.0
3,991,647	-				-2.2
3,991,647	-				-0.0
3,991,647	-				-1.2
3,991,647	-				-2.2
3,991,647	-				-0.0
3,991,704	+				-2.1
3,991,705	-				-0.0
3,991,911	+		Pf1N1B4_3581	0.18	-1.3
3,991,996	+		Pf1N1B4_3581	0.28	-0.0
3,991,996	+		Pf1N1B4_3581	0.28	-3.4
3,991,997	-		Pf1N1B4_3581	0.28	-0.0
3,992,022	+		Pf1N1B4_3581	0.31	-0.0
3,992,022	+		Pf1N1B4_3581	0.31	-0.0
3,992,023	-		Pf1N1B4_3581	0.31	-0.0
3,992,251	+		Pf1N1B4_3581	0.58	-0.0
3,992,588	+				-0.0
3,992,589	-				-0.0
3,992,589	-				-0.0
3,992,589	-				-0.0
3,992,618	+				-0.0