Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3448

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,842,909	+		Pf1N1B4_3447	0.44	-0.0
3,842,960	+		Pf1N1B4_3447	0.49	-0.8
3,843,046	+		Pf1N1B4_3447	0.57	-1.0
3,843,071	+		Pf1N1B4_3447	0.60	-0.0
3,843,071	+		Pf1N1B4_3447	0.60	-0.0
3,843,071	+		Pf1N1B4_3447	0.60	-0.0
3,843,071	+		Pf1N1B4_3447	0.60	-0.0
3,843,071	+				-1.0
3,843,071	+				-0.0
3,843,071	+		Pf1N1B4_3447	0.60	-2.9
3,843,072	-		Pf1N1B4_3447	0.60	-0.0
3,843,072	-				-1.0
3,843,072	-		Pf1N1B4_3447	0.60	-3.2
3,843,072	-		Pf1N1B4_3447	0.60	-0.0
3,843,073	+		Pf1N1B4_3447	0.60	-0.0
3,843,073	+		Pf1N1B4_3447	0.60	-0.0
3,843,074	-		Pf1N1B4_3447	0.60	-0.0
3,843,074	-		Pf1N1B4_3447	0.60	-0.0
3,843,077	+		Pf1N1B4_3447	0.60	-0.0
3,843,077	+		Pf1N1B4_3447	0.60	-1.5
3,843,077	+		Pf1N1B4_3447	0.60	-1.1
3,843,077	+				-0.0
3,843,078	-		Pf1N1B4_3447	0.60	-0.0
3,843,078	-		Pf1N1B4_3447	0.60	-0.0
3,843,078	-		Pf1N1B4_3447	0.60	-2.6
3,843,078	-				-0.0
3,843,078	-		Pf1N1B4_3447	0.60	-0.0
3,843,277	+		Pf1N1B4_3447	0.80	-0.0
3,843,335	+		Pf1N1B4_3447	0.86	-0.0
3,843,335	+				-1.6
3,843,335	+		Pf1N1B4_3447	0.86	-1.9
3,843,336	-		Pf1N1B4_3447	0.86	-0.0
3,843,336	-		Pf1N1B4_3447	0.86	-0.0
3,843,336	-		Pf1N1B4_3447	0.86	-0.0
3,843,476	+				-0.0
3,843,680	+				-0.0
3,843,680	+		Pf1N1B4_3448	0.17	-0.0
3,843,681	-		Pf1N1B4_3448	0.18	-2.5
3,843,681	-				-0.0
3,843,832	+		Pf1N1B4_3448	0.47	-2.4
3,843,832	+		Pf1N1B4_3448	0.47	-1.9
3,843,833	-		Pf1N1B4_3448	0.47	-0.0
3,843,833	-		Pf1N1B4_3448	0.47	-0.0
3,843,833	-		Pf1N1B4_3448	0.47	-0.0
3,843,833	-		Pf1N1B4_3448	0.47	-0.0
3,844,154	-				-1.2
3,844,159	+				-0.0
3,844,194	+				-1.5
3,844,194	+				-0.0
3,844,196	+				-2.0
3,844,196	+				-2.1
3,844,196	+				-0.0
3,844,239	+				-2.0
3,844,240	-				-0.0
3,844,240	-				-2.4
3,844,240	-				-0.0
3,844,240	-				-0.0
3,844,327	+				-0.0
3,844,417	+				-0.0
3,844,418	-				-0.0
3,844,424	+				-2.7
3,844,424	+				-0.0
3,844,424	+				-2.2
3,844,424	+				-1.0
3,844,425	-				-0.7
3,844,507	+				-0.0
3,844,507	+				-0.0
3,844,507	+				-0.0
3,844,507	+				-1.4
3,844,507	+				-0.0
3,844,507	+				-0.0
3,844,507	+				-1.7
3,844,508	-				-0.0
3,844,606	+				-0.0
3,844,627	+				-2.0
3,844,628	-				-0.0
3,844,767	+				-0.0
3,844,768	-				-3.3
3,844,768	-				-0.6
3,844,768	-				-0.0
3,844,768	-				-3.2
3,844,905	+		Pf1N1B4_3449	0.23	-0.0
3,844,905	+		Pf1N1B4_3449	0.23	-2.5
3,844,905	+		Pf1N1B4_3449	0.23	-0.0
3,844,905	+		Pf1N1B4_3449	0.23	-3.1
3,844,905	+		Pf1N1B4_3449	0.23	-1.0
3,844,906	-		Pf1N1B4_3449	0.23	+1.0
3,844,906	-		Pf1N1B4_3449	0.23	-1.3
3,844,906	-		Pf1N1B4_3449	0.23	-0.0
3,844,906	-		Pf1N1B4_3449	0.23	-0.0
3,844,906	-		Pf1N1B4_3449	0.23	-0.0
3,844,906	-		Pf1N1B4_3449	0.23	-0.0
3,844,906	-		Pf1N1B4_3449	0.23	-1.2
3,844,932	+		Pf1N1B4_3449	0.26	-1.5
3,844,932	+		Pf1N1B4_3449	0.26	-1.7
3,844,932	+				-0.0
3,844,932	+		Pf1N1B4_3449	0.26	-0.0
3,844,932	+		Pf1N1B4_3449	0.26	-0.0
3,844,932	+		Pf1N1B4_3449	0.26	-0.0
3,844,932	+		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-				-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-3.1
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-1.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-1.1
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,933	-		Pf1N1B4_3449	0.26	-0.0
3,844,934	+		Pf1N1B4_3449	0.26	-0.0
3,844,934	+		Pf1N1B4_3449	0.26	-0.0
3,844,934	+		Pf1N1B4_3449	0.26	-0.0
3,844,934	+		Pf1N1B4_3449	0.26	-2.3
3,844,934	+		Pf1N1B4_3449	0.26	-1.7
3,844,934	+		Pf1N1B4_3449	0.26	-0.0
3,844,934	+		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,935	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-				-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-1.8
3,844,939	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-0.0
3,844,939	-		Pf1N1B4_3449	0.26	-0.0