Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3405

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,796,550	-		Pf1N1B4_3403	0.77	-0.0
3,797,431	+				-0.0
3,797,431	+				-0.0
3,797,432	-				-0.0
3,797,432	-				-1.0
3,797,432	-				-0.0
3,797,463	-				-0.0
3,797,463	-				-0.0
3,797,564	+				-0.0
3,797,564	+				-0.0
3,797,564	+				-0.6
3,797,565	-				-0.0
3,797,565	-				-0.0
3,797,565	-				-0.0
3,797,565	-				-0.0
3,797,565	-				-0.0
3,797,764	+		Pf1N1B4_3405	0.26	-0.0
3,798,326	+		Pf1N1B4_3405	0.73	-0.0
3,798,327	-		Pf1N1B4_3405	0.73	-3.4
3,798,327	-		Pf1N1B4_3405	0.73	-0.0
3,798,341	+				-0.0
3,798,342	-		Pf1N1B4_3405	0.75	-3.3
3,798,342	-		Pf1N1B4_3405	0.75	-1.8
3,798,342	-		Pf1N1B4_3405	0.75	-0.0
3,798,342	-		Pf1N1B4_3405	0.75	-0.0
3,798,475	+		Pf1N1B4_3405	0.86	-2.4
3,798,475	+		Pf1N1B4_3405	0.86	-0.0
3,798,476	-		Pf1N1B4_3405	0.86	-0.0
3,798,687	-				-3.9
3,798,794	+				-0.3
3,798,794	+				+0.3
3,798,794	+				-0.0
3,798,795	-				-0.0
3,798,795	-				-1.7
3,798,795	-				-1.4
3,798,892	+		Pf1N1B4_3406	0.31	-0.0
3,799,130	+				-0.0
3,799,130	+				-1.5
3,799,130	+				-0.0
3,799,131	-				-1.3
3,799,159	+				-0.0
3,799,159	+				-0.0
3,799,160	-				-0.0
3,799,160	-				-1.5
3,799,160	-				-0.0
3,799,160	-				-0.0
3,799,160	-				-0.0
3,799,160	-				-0.8
3,799,160	-				-3.1
3,799,268	+				-1.1
3,799,268	+				-0.0
3,799,268	+				-2.0
3,799,268	+				-0.0
3,799,268	+				-0.0
3,799,269	-				-0.0
3,799,269	-				-0.0
3,799,269	-				-0.0
3,799,269	-				-2.0
3,799,269	-				-0.0
3,799,269	-				-0.0
3,799,269	-				-0.0
3,799,286	+				-1.5
3,799,286	+				-1.7
3,799,286	+				-0.0
3,799,286	+				-0.0
3,799,287	-				-1.5
3,799,287	-				+1.0
3,799,287	-				-1.4
3,799,287	-				-0.0
3,799,312	+				-1.6
3,799,312	+				-1.2
3,799,424	+		Pf1N1B4_3407	0.18	-0.0