Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3370

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,757,100	+		Pf1N1B4_3369	0.20	-3.3
3,757,139	+		Pf1N1B4_3369	0.23	-0.0
3,757,151	+		Pf1N1B4_3369	0.24	-0.0
3,757,152	-		Pf1N1B4_3369	0.24	-0.0
3,757,223	+		Pf1N1B4_3369	0.30	-0.7
3,757,223	+		Pf1N1B4_3369	0.30	-2.3
3,757,224	-		Pf1N1B4_3369	0.30	-1.1
3,757,224	-		Pf1N1B4_3369	0.30	-0.0
3,757,224	-		Pf1N1B4_3369	0.30	-0.0
3,757,224	-		Pf1N1B4_3369	0.30	-1.1
3,757,224	-				-0.0
3,757,241	+		Pf1N1B4_3369	0.32	-1.9
3,757,241	+				-0.0
3,757,241	+		Pf1N1B4_3369	0.32	-3.1
3,757,242	-		Pf1N1B4_3369	0.32	-0.0
3,757,242	-		Pf1N1B4_3369	0.32	-0.0
3,757,242	-		Pf1N1B4_3369	0.32	-0.0
3,757,242	-		Pf1N1B4_3369	0.32	-0.0
3,757,247	+		Pf1N1B4_3369	0.32	-1.4
3,757,247	+		Pf1N1B4_3369	0.32	-0.0
3,757,247	+		Pf1N1B4_3369	0.32	-0.2
3,757,248	-				-0.0
3,757,248	-		Pf1N1B4_3369	0.32	-1.8
3,757,467	+		Pf1N1B4_3369	0.51	-2.1
3,757,468	-		Pf1N1B4_3369	0.51	+1.0
3,757,535	+		Pf1N1B4_3369	0.57	-0.0
3,757,536	-		Pf1N1B4_3369	0.57	-0.0
3,757,854	-		Pf1N1B4_3369	0.84	-0.0
3,757,922	+		Pf1N1B4_3369	0.89	-2.1
3,757,922	+		Pf1N1B4_3369	0.89	-0.0
3,757,922	+		Pf1N1B4_3369	0.89	-0.0
3,757,922	+		Pf1N1B4_3369	0.89	-0.0
3,757,922	+		Pf1N1B4_3369	0.89	-1.8
3,757,923	-		Pf1N1B4_3369	0.89	-0.9
3,757,923	-		Pf1N1B4_3369	0.89	-0.0
3,757,923	-		Pf1N1B4_3369	0.89	-1.8
3,757,923	-		Pf1N1B4_3369	0.89	-1.9
3,757,923	-		Pf1N1B4_3369	0.89	-0.0
3,757,923	-		Pf1N1B4_3369	0.89	-0.0
3,757,923	-		Pf1N1B4_3369	0.89	-0.0
3,757,925	+		Pf1N1B4_3369	0.90	+0.6
3,757,925	+		Pf1N1B4_3369	0.90	-0.0
3,757,925	+		Pf1N1B4_3369	0.90	-0.0
3,757,925	+		Pf1N1B4_3369	0.90	-1.3
3,757,926	-		Pf1N1B4_3369	0.90	-0.0
3,757,926	-		Pf1N1B4_3369	0.90	-0.9
3,757,926	-		Pf1N1B4_3369	0.90	-0.0
3,758,271	+		Pf1N1B4_3370	0.25	-0.0
3,758,377	+		Pf1N1B4_3370	0.38	-0.0
3,758,377	+		Pf1N1B4_3370	0.38	-0.0
3,758,377	+				-1.1
3,758,377	+		Pf1N1B4_3370	0.38	-0.0
3,758,377	+		Pf1N1B4_3370	0.38	-0.0
3,758,378	-		Pf1N1B4_3370	0.38	-3.9
3,758,378	-		Pf1N1B4_3370	0.38	-0.0
3,758,435	+		Pf1N1B4_3370	0.45	-0.0
3,758,435	+		Pf1N1B4_3370	0.45	-1.0
3,758,436	-		Pf1N1B4_3370	0.45	-0.0
3,758,436	-		Pf1N1B4_3370	0.45	-0.0
3,758,491	+		Pf1N1B4_3370	0.51	-0.0
3,758,491	+		Pf1N1B4_3370	0.51	-0.0
3,758,491	+		Pf1N1B4_3370	0.51	-0.0
3,758,492	-		Pf1N1B4_3370	0.51	-0.0
3,758,492	-		Pf1N1B4_3370	0.51	-4.2
3,758,492	-		Pf1N1B4_3370	0.51	-1.4
3,758,623	+		Pf1N1B4_3370	0.67	-0.0
3,758,738	+		Pf1N1B4_3370	0.80	-0.0
3,758,878	+				-2.1
3,758,879	-				-0.0
3,758,879	-				-2.5
3,758,957	+				-0.0
3,758,957	+				-1.2
3,758,958	-				-0.0
3,758,958	-				-0.0
3,758,958	-				-0.0
3,758,963	+				-0.0
3,758,963	+				-0.0
3,758,964	-				-0.0
3,758,964	-				-2.5
3,758,964	-				-1.1
3,758,967	-				-1.4
3,758,974	+				-0.0
3,758,974	+				-2.3
3,758,975	-				-0.0
3,758,975	-				-2.3
3,758,975	-				-1.2
3,758,975	-				-1.2
3,759,013	+				-1.6
3,759,014	-				-4.1
3,759,014	-				-0.0
3,759,068	+				-0.0
3,759,111	+				-1.0
3,759,111	+				-3.6
3,759,111	+				-1.2
3,759,111	+				-0.0
3,759,112	-				-0.0
3,759,112	-				-0.0
3,759,112	-				-2.5
3,759,114	+				-1.8
3,759,114	+				-0.0
3,759,114	+				-0.0
3,759,114	+				-1.9
3,759,114	+				-2.4
3,759,114	+				-0.0
3,759,114	+				-0.0
3,759,114	+				-1.1
3,759,114	+				-0.0
3,759,114	+				-0.0
3,759,114	+				-0.0
3,759,115	-				-1.3
3,759,115	-				-0.0
3,759,115	-				-0.7
3,759,115	-				-0.0
3,759,115	-				-0.0
3,759,115	-				-0.0
3,759,115	-				-1.4
3,759,115	-				-0.0
3,759,115	-				-2.7
3,759,115	-				-0.8
3,759,115	-				-1.4
3,759,119	-				-1.1
3,759,133	-				-2.4
3,759,328	+				-2.0
3,759,561	+		Pf1N1B4_3372	0.47	-0.0
3,759,561	+		Pf1N1B4_3372	0.47	-0.0
3,759,562	-		Pf1N1B4_3372	0.47	-1.4
3,759,589	+		Pf1N1B4_3372	0.53	-1.6
3,759,606	-		Pf1N1B4_3372	0.56	-0.0
3,759,683	+				-0.0