Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3196

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,578,561	-		Pf1N1B4_3195	0.74	-0.0
3,578,587	+		Pf1N1B4_3195	0.75	-2.1
3,578,587	+		Pf1N1B4_3195	0.75	-0.0
3,578,588	-		Pf1N1B4_3195	0.75	-0.0
3,578,718	+		Pf1N1B4_3195	0.80	-0.0
3,578,718	+		Pf1N1B4_3195	0.80	-4.4
3,578,718	+		Pf1N1B4_3195	0.80	-0.0
3,578,719	-		Pf1N1B4_3195	0.80	-0.0
3,578,719	-		Pf1N1B4_3195	0.80	-1.3
3,578,719	-		Pf1N1B4_3195	0.80	-0.0
3,578,722	+		Pf1N1B4_3195	0.80	-0.0
3,578,722	+		Pf1N1B4_3195	0.80	-0.0
3,578,722	+		Pf1N1B4_3195	0.80	-0.0
3,578,722	+		Pf1N1B4_3195	0.80	-0.0
3,578,722	+		Pf1N1B4_3195	0.80	-0.0
3,578,723	-		Pf1N1B4_3195	0.80	-1.0
3,578,723	-		Pf1N1B4_3195	0.80	-0.0
3,578,723	-		Pf1N1B4_3195	0.80	-0.0
3,578,941	+		Pf1N1B4_3195	0.89	-0.0
3,579,220	+				-0.0
3,579,221	-				-2.3
3,579,290	+				-0.0
3,579,348	+				-0.0
3,579,349	-				-0.7
3,579,421	+				-0.0
3,579,421	+				-0.0
3,579,421	+				-0.0
3,579,422	-				-0.9
3,579,423	+				-1.8
3,579,423	+				-2.5
3,579,423	+				-1.0
3,579,423	+				-0.0
3,579,423	+				-0.0
3,579,423	+				-3.2
3,579,423	+				-0.0
3,579,423	+				-1.8
3,579,424	-				-0.0
3,579,424	-				-1.3
3,579,424	-				-0.0
3,579,468	+				-0.0
3,579,468	+				-1.3
3,579,469	-				-0.0
3,579,469	-				-0.0
3,579,476	+				-0.0
3,579,476	+				-2.0
3,579,476	+				-2.0
3,579,477	-				-0.0
3,579,477	-				-1.1
3,579,477	-				-0.0
3,579,477	-				-1.6
3,579,477	-				-0.0
3,579,477	-				-1.0
3,579,844	-		Pf1N1B4_3196	0.34	-0.0
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,930	+		Pf1N1B4_3196	0.42	-2.5
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-2.3
3,579,931	-		Pf1N1B4_3196	0.42	-2.5
3,579,952	+		Pf1N1B4_3196	0.44	-0.0
3,579,953	-		Pf1N1B4_3196	0.44	-0.0
3,579,953	-		Pf1N1B4_3196	0.44	-0.0
3,580,181	+		Pf1N1B4_3196	0.64	-0.0
3,580,181	+		Pf1N1B4_3196	0.64	-0.0
3,580,181	+		Pf1N1B4_3196	0.64	-0.0
3,580,182	-		Pf1N1B4_3196	0.64	-0.0
3,580,182	-		Pf1N1B4_3196	0.64	-0.9
3,580,182	-		Pf1N1B4_3196	0.64	-0.0
3,580,182	-		Pf1N1B4_3196	0.64	-0.0
3,580,183	+		Pf1N1B4_3196	0.64	-0.0
3,580,183	+		Pf1N1B4_3196	0.64	-2.4
3,580,190	+		Pf1N1B4_3196	0.65	-0.0
3,580,190	+		Pf1N1B4_3196	0.65	-3.3
3,580,191	-		Pf1N1B4_3196	0.65	-4.2
3,580,273	-		Pf1N1B4_3196	0.72	-1.5
3,580,273	-		Pf1N1B4_3196	0.72	-0.0
3,580,273	-		Pf1N1B4_3196	0.72	-0.0
3,580,273	-				-1.7
3,580,361	-		Pf1N1B4_3196	0.79	-0.0
3,580,412	-		Pf1N1B4_3196	0.84	-3.8
3,580,412	-		Pf1N1B4_3196	0.84	-2.3
3,580,495	-				-1.6
3,580,523	+				-1.6
3,580,523	+				-0.0
3,580,524	-				-1.3
3,580,524	-				-2.3
3,580,537	-				-0.0
3,580,537	-				-0.0
3,580,537	-				-0.0
3,580,537	-				-0.0
3,580,593	+				-0.0
3,580,593	+				-0.0
3,580,594	-				-3.4
3,580,594	-				-2.0
3,580,687	-				-0.0
3,580,719	+				-0.0
3,580,719	+				-1.9
3,580,974	+		Pf1N1B4_3197	0.24	-0.0
3,580,974	+		Pf1N1B4_3197	0.24	-0.0
3,581,123	-		Pf1N1B4_3197	0.38	-0.0
3,581,319	-		Pf1N1B4_3197	0.56	+1.0
3,581,319	-		Pf1N1B4_3197	0.56	-1.0
3,581,334	+		Pf1N1B4_3197	0.57	-0.0
3,581,334	+		Pf1N1B4_3197	0.57	-0.0
3,581,334	+		Pf1N1B4_3197	0.57	-2.6
3,581,334	+		Pf1N1B4_3197	0.57	-2.0
3,581,335	-		Pf1N1B4_3197	0.57	-0.0
3,581,335	-		Pf1N1B4_3197	0.57	-0.0
3,581,335	-		Pf1N1B4_3197	0.57	-2.8
3,581,335	-		Pf1N1B4_3197	0.57	-0.0
3,581,335	-				-0.0
3,581,335	-		Pf1N1B4_3197	0.57	-0.0
3,581,335	-		Pf1N1B4_3197	0.57	+0.6
3,581,560	+		Pf1N1B4_3197	0.78	-2.1
3,581,560	+		Pf1N1B4_3197	0.78	-0.0
3,581,560	+		Pf1N1B4_3197	0.78	-0.0
3,581,560	+		Pf1N1B4_3197	0.78	-1.0
3,581,560	+		Pf1N1B4_3197	0.78	-0.0
3,581,560	+				-0.0
3,581,561	-		Pf1N1B4_3197	0.78	-0.0
3,581,561	-		Pf1N1B4_3197	0.78	-0.5
3,581,561	-		Pf1N1B4_3197	0.78	-0.0
3,581,561	-		Pf1N1B4_3197	0.78	-0.0