Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2761

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
3,098,947	+		Pf1N1B4_2760	0.36	-0.0
3,098,947	+		Pf1N1B4_2760	0.36	-0.0
3,098,948	-		Pf1N1B4_2760	0.36	-0.0
3,098,948	-		Pf1N1B4_2760	0.36	-1.1
3,099,021	+		Pf1N1B4_2760	0.41	-0.0
3,099,022	-		Pf1N1B4_2760	0.41	-0.0
3,099,048	+		Pf1N1B4_2760	0.43	-0.0
3,099,048	+		Pf1N1B4_2760	0.43	-0.0
3,099,049	-		Pf1N1B4_2760	0.43	-0.0
3,099,049	-		Pf1N1B4_2760	0.43	-0.0
3,099,049	-		Pf1N1B4_2760	0.43	-0.0
3,099,192	+		Pf1N1B4_2760	0.53	-0.0
3,099,193	-		Pf1N1B4_2760	0.53	-1.4
3,099,193	-		Pf1N1B4_2760	0.53	-1.2
3,099,482	+		Pf1N1B4_2760	0.73	-1.6
3,099,482	+		Pf1N1B4_2760	0.73	-0.0
3,099,482	+		Pf1N1B4_2760	0.73	-2.1
3,099,482	+		Pf1N1B4_2760	0.73	-0.0
3,099,482	+		Pf1N1B4_2760	0.73	-2.5
3,099,482	+		Pf1N1B4_2760	0.73	-0.0
3,099,482	+		Pf1N1B4_2760	0.73	-0.0
3,099,483	-		Pf1N1B4_2760	0.73	-1.6
3,099,483	-				-1.7
3,099,483	-		Pf1N1B4_2760	0.73	-0.0
3,099,483	-		Pf1N1B4_2760	0.73	-0.8
3,099,484	+		Pf1N1B4_2760	0.73	-2.6
3,099,484	+		Pf1N1B4_2760	0.73	-0.0
3,099,485	-				-2.6
3,099,503	+		Pf1N1B4_2760	0.75	+1.0
3,099,593	+		Pf1N1B4_2760	0.81	-0.0
3,099,677	+		Pf1N1B4_2760	0.87	-0.0
3,099,677	+		Pf1N1B4_2760	0.87	-0.0
3,099,707	+		Pf1N1B4_2760	0.89	-0.0
3,099,707	+		Pf1N1B4_2760	0.89	-0.0
3,099,707	+		Pf1N1B4_2760	0.89	-0.0
3,099,708	-		Pf1N1B4_2760	0.89	-1.2
3,099,839	-				-1.9
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-1.2
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-1.1
3,099,929	+				-0.0
3,099,929	+				-1.1
3,099,929	+				-0.0
3,099,929	+				-2.1
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,929	+				-0.0
3,099,930	-				-0.0
3,099,930	-				-0.0
3,099,930	-				-1.6
3,099,930	-				-0.0
3,099,930	-				-3.3
3,099,930	-				-1.6
3,099,930	-				-1.0
3,099,930	-				-1.8
3,099,930	-				+0.1
3,099,930	-				-0.0
3,099,930	-				-1.1
3,099,930	-				-0.0
3,100,053	+				-0.8
3,100,053	+		Pf1N1B4_2761	0.18	-0.0
3,100,053	+		Pf1N1B4_2761	0.18	-3.8
3,100,053	+		Pf1N1B4_2761	0.18	-0.0
3,100,056	+		Pf1N1B4_2761	0.18	-1.8
3,100,056	+		Pf1N1B4_2761	0.18	-0.0
3,100,056	+		Pf1N1B4_2761	0.18	-0.0
3,100,056	+		Pf1N1B4_2761	0.18	-0.0
3,100,057	-		Pf1N1B4_2761	0.18	-0.0
3,100,057	-		Pf1N1B4_2761	0.18	-0.0
3,100,098	-		Pf1N1B4_2761	0.22	-2.5
3,100,121	+		Pf1N1B4_2761	0.25	-2.3
3,100,121	+		Pf1N1B4_2761	0.25	-0.0
3,100,121	+		Pf1N1B4_2761	0.25	-2.1
3,100,605	-		Pf1N1B4_2761	0.73	-0.0
3,100,605	-		Pf1N1B4_2761	0.73	-3.6
3,100,640	+		Pf1N1B4_2761	0.76	-0.0
3,100,640	+		Pf1N1B4_2761	0.76	-0.0
3,100,640	+		Pf1N1B4_2761	0.76	-0.0
3,100,640	+		Pf1N1B4_2761	0.76	-0.0
3,100,640	+		Pf1N1B4_2761	0.76	-0.0
3,100,641	-		Pf1N1B4_2761	0.76	-3.1
3,100,817	+				-2.1
3,100,832	+				-0.0
3,100,832	+				-0.0
3,100,832	+				-1.4
3,100,832	+				-2.5
3,100,832	+				-1.8
3,100,835	+				-0.0
3,100,835	+				-0.0
3,100,835	+				-1.6
3,100,835	+				-0.0
3,100,835	+				-0.0
3,100,835	+				-0.9
3,100,835	+				-0.0
3,100,835	+				-2.3
3,100,836	-				-0.0
3,100,836	-				-0.0
3,100,836	-				-0.0
3,100,836	-				-0.9
3,100,836	-				-0.0
3,100,836	-				-0.0
3,100,836	-				-0.0
3,101,056	-		Pf1N1B4_2762	0.75	-0.0
3,101,056	-		Pf1N1B4_2762	0.75	-0.0
3,101,131	+				-1.3
3,101,131	+				-0.0
3,101,131	+				-0.0
3,101,131	+				-0.0
3,101,131	+				-0.0
3,101,131	+				-0.0
3,101,131	+				-0.0
3,101,132	-				-0.0
3,101,132	-				-0.0
3,101,132	-				-0.0
3,101,132	-				-0.0
3,101,171	+				-2.7
3,101,172	-				-0.0
3,101,282	+				-0.0
3,101,282	+				-0.0
3,101,282	+				-0.0
3,101,282	+				-0.0
3,101,283	-		Pf1N1B4_2763	0.10	-0.0
3,101,283	-		Pf1N1B4_2763	0.10	-0.0
3,101,283	-		Pf1N1B4_2763	0.10	-0.6
3,101,283	-		Pf1N1B4_2763	0.10	-0.0
3,101,300	-		Pf1N1B4_2763	0.12	+1.0
3,101,522	+		Pf1N1B4_2763	0.31	-1.8
3,101,523	-		Pf1N1B4_2763	0.31	-0.0
3,101,523	-		Pf1N1B4_2763	0.31	-1.3
3,101,816	+		Pf1N1B4_2763	0.57	-0.0
3,101,817	-		Pf1N1B4_2763	0.58	-0.0
3,101,817	-		Pf1N1B4_2763	0.58	-1.8
3,101,817	-		Pf1N1B4_2763	0.58	-0.0