Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2361

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
2,677,794	+		Pf1N1B4_2360	0.72	-0.0
2,677,794	+		Pf1N1B4_2360	0.72	-0.0
2,677,794	+		Pf1N1B4_2360	0.72	-1.7
2,677,794	+		Pf1N1B4_2360	0.72	-2.4
2,677,795	-		Pf1N1B4_2360	0.73	-0.0
2,677,795	-		Pf1N1B4_2360	0.73	-0.0
2,677,885	+				-1.9
2,677,885	+				-0.0
2,677,886	-				-2.4
2,677,897	+				-1.9
2,677,897	+				-0.0
2,677,897	+				-1.8
2,677,897	+				-1.1
2,677,897	+				+1.0
2,677,898	-				-0.0
2,677,898	-				-0.0
2,677,898	-				-0.0
2,677,898	-				-1.4
2,677,898	-				-1.0
2,677,898	-				-0.0
2,677,898	-				-2.8
2,677,912	+				-1.1
2,677,913	-				-0.0
2,677,913	-				-1.7
2,677,913	-				-0.0
2,677,963	-				-0.0
2,678,007	+				-0.0
2,678,007	+				-1.1
2,678,007	+				-1.9
2,678,008	-				-0.0
2,678,008	-				-0.0
2,678,008	-				-0.0
2,678,008	-				-0.0
2,678,049	+				-0.0
2,678,050	-				-1.6
2,678,065	+				-0.0
2,678,065	+				-1.4
2,678,065	+				-0.0
2,678,065	+				-0.0
2,678,065	+				-0.0
2,678,065	+				-0.0
2,678,066	-				-0.0
2,678,066	-				-0.0
2,678,066	-				-1.9
2,678,066	-				-0.0
2,678,070	+				-1.7
2,678,147	+				-0.0
2,678,195	+				-0.0
2,678,196	-				-0.0
2,678,249	-				+0.9
2,678,447	-				-2.7
2,678,503	+				-0.0
2,678,504	-				-0.0
2,678,504	-				-0.0
2,678,504	-				-0.0
2,678,555	-				-0.0
2,678,555	-				-0.0
2,678,940	+		Pf1N1B4_2361	0.20	-1.9
2,678,940	+				+0.2
2,678,940	+		Pf1N1B4_2361	0.20	-1.3
2,678,940	+		Pf1N1B4_2361	0.20	-1.9
2,678,940	+		Pf1N1B4_2361	0.20	-2.1
2,678,940	+		Pf1N1B4_2361	0.20	-1.7
2,678,940	+		Pf1N1B4_2361	0.20	-1.6
2,678,941	-		Pf1N1B4_2361	0.21	-0.0
2,678,941	-		Pf1N1B4_2361	0.21	-0.0
2,678,941	-		Pf1N1B4_2361	0.21	-2.4
2,678,941	-		Pf1N1B4_2361	0.21	-0.0
2,678,941	-		Pf1N1B4_2361	0.21	-1.9
2,678,941	-		Pf1N1B4_2361	0.21	-0.0
2,678,952	+		Pf1N1B4_2361	0.21	-0.0
2,678,952	+		Pf1N1B4_2361	0.21	-0.0
2,678,953	-		Pf1N1B4_2361	0.21	-0.0
2,679,030	+		Pf1N1B4_2361	0.26	-0.0
2,679,030	+		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,031	-		Pf1N1B4_2361	0.26	-0.0
2,679,201	+		Pf1N1B4_2361	0.37	-2.5
2,679,201	+		Pf1N1B4_2361	0.37	-2.2
2,679,201	+		Pf1N1B4_2361	0.37	-0.0
2,679,201	+		Pf1N1B4_2361	0.37	-0.0
2,679,202	-		Pf1N1B4_2361	0.37	-0.0
2,679,202	-		Pf1N1B4_2361	0.37	-1.9
2,679,202	-		Pf1N1B4_2361	0.37	-0.0
2,679,202	-		Pf1N1B4_2361	0.37	-2.8
2,679,202	-		Pf1N1B4_2361	0.37	-0.0
2,679,286	-		Pf1N1B4_2361	0.42	-0.8
2,679,286	-		Pf1N1B4_2361	0.42	-2.3
2,679,286	-		Pf1N1B4_2361	0.42	-0.0
2,679,363	+		Pf1N1B4_2361	0.47	-0.0
2,679,363	+		Pf1N1B4_2361	0.47	-1.1
2,679,364	-		Pf1N1B4_2361	0.47	-0.0
2,679,364	-		Pf1N1B4_2361	0.47	-0.0
2,679,364	-		Pf1N1B4_2361	0.47	-0.0
2,679,364	-		Pf1N1B4_2361	0.47	-0.0
2,679,501	+		Pf1N1B4_2361	0.56	-0.0
2,679,501	+		Pf1N1B4_2361	0.56	-0.0
2,679,502	-		Pf1N1B4_2361	0.56	-0.0
2,679,502	-		Pf1N1B4_2361	0.56	-0.0
2,679,910	-				-2.5
2,679,954	+				-0.0
2,679,955	-		Pf1N1B4_2361	0.84	-0.0
2,679,960	+		Pf1N1B4_2361	0.84	-0.0
2,679,960	+		Pf1N1B4_2361	0.84	-1.6
2,679,960	+		Pf1N1B4_2361	0.84	+1.0
2,679,960	+		Pf1N1B4_2361	0.84	-0.0
2,679,960	+		Pf1N1B4_2361	0.84	-1.0
2,679,960	+		Pf1N1B4_2361	0.84	-1.1
2,679,961	-		Pf1N1B4_2361	0.84	-0.0
2,680,038	-		Pf1N1B4_2361	0.89	-1.3
2,680,179	+				-0.0
2,680,179	+				-1.0
2,680,179	+				-0.0
2,680,179	+				-0.0
2,680,180	-				-2.2
2,680,180	-				-0.0
2,680,180	-				-3.0
2,680,180	-				-0.0
2,680,180	-				-0.0
2,680,180	-				-0.0
2,680,180	-				-0.0
2,680,356	+		Pf1N1B4_2362	0.17	-0.0
2,680,356	+		Pf1N1B4_2362	0.17	-0.0
2,680,356	+		Pf1N1B4_2362	0.17	-3.7
2,680,357	-		Pf1N1B4_2362	0.17	-0.3
2,680,357	-		Pf1N1B4_2362	0.17	-0.0
2,680,357	-		Pf1N1B4_2362	0.17	-0.0
2,680,449	+		Pf1N1B4_2362	0.27	-0.8
2,680,526	-		Pf1N1B4_2362	0.36	-1.1
2,680,526	-		Pf1N1B4_2362	0.36	-0.0
2,680,591	+		Pf1N1B4_2362	0.43	-0.0
2,680,592	-		Pf1N1B4_2362	0.43	-1.0
2,680,592	-		Pf1N1B4_2362	0.43	-2.5
2,680,665	+		Pf1N1B4_2362	0.52	-1.2
2,680,666	-		Pf1N1B4_2362	0.52	-0.0
2,680,981	-		Pf1N1B4_2362	0.88	-0.0