Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1994

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
2,277,360	+				-1.7
2,277,360	+				-0.0
2,277,360	+				-1.8
2,277,361	-				-1.4
2,277,361	-				-4.6
2,277,493	-		Pf1N1B4_1992	0.25	-0.0
2,277,493	-		Pf1N1B4_1992	0.25	-3.3
2,277,588	-		Pf1N1B4_1992	0.50	-0.0
2,277,606	+		Pf1N1B4_1992	0.55	-2.5
2,277,606	+		Pf1N1B4_1992	0.55	-0.0
2,277,606	+		Pf1N1B4_1992	0.55	-0.0
2,277,606	+		Pf1N1B4_1992	0.55	-0.0
2,277,606	+		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-2.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-0.4
2,277,607	-		Pf1N1B4_1992	0.55	-1.8
2,277,607	-		Pf1N1B4_1992	0.55	-0.0
2,277,607	-		Pf1N1B4_1992	0.55	-2.0
2,277,636	+		Pf1N1B4_1992	0.63	-0.0
2,277,636	+		Pf1N1B4_1992	0.63	-0.0
2,277,656	+		Pf1N1B4_1992	0.68	-0.0
2,277,656	+		Pf1N1B4_1992	0.68	-0.0
2,277,656	+		Pf1N1B4_1992	0.68	-0.0
2,277,657	-		Pf1N1B4_1992	0.69	-0.0
2,277,657	-		Pf1N1B4_1992	0.69	-0.0
2,277,657	-		Pf1N1B4_1992	0.69	-0.0
2,277,657	-		Pf1N1B4_1992	0.69	-0.0
2,277,657	-		Pf1N1B4_1992	0.69	-0.0
2,277,802	+				-0.0
2,277,802	+				-0.0
2,277,803	-				-0.0
2,277,803	-				-0.8
2,277,828	+				-2.3
2,277,829	-				-2.2
2,277,942	+				-0.0
2,277,942	+				-0.0
2,277,943	-				-0.0
2,277,943	-				-0.0
2,277,943	-				-0.0
2,277,943	-				-0.0
2,278,253	+		Pf1N1B4_1993	0.86	-0.0
2,278,253	+		Pf1N1B4_1993	0.86	+0.1
2,278,330	+				-0.0
2,278,331	-				-0.0
2,278,331	-				-0.0
2,278,393	-				-0.0
2,278,401	+				-0.0
2,278,401	+				-0.0
2,278,402	-				-0.0
2,278,405	+				-2.1
2,278,405	+				-0.0
2,278,405	+				-0.0
2,278,405	+				-1.3
2,278,410	-				-0.0
2,278,413	-				-0.0
2,278,413	-				-0.0
2,278,712	+		Pf1N1B4_1994	0.31	-1.4
2,278,712	+		Pf1N1B4_1994	0.31	-0.0
2,278,712	+		Pf1N1B4_1994	0.31	-1.4
2,278,713	-		Pf1N1B4_1994	0.31	-0.0
2,278,721	+		Pf1N1B4_1994	0.32	-0.0
2,278,769	-		Pf1N1B4_1994	0.36	-2.8
2,278,769	-		Pf1N1B4_1994	0.36	-0.0
2,279,096	-		Pf1N1B4_1994	0.63	-0.0
2,279,206	+		Pf1N1B4_1994	0.72	-0.0
2,279,206	+		Pf1N1B4_1994	0.72	-0.0
2,279,207	-		Pf1N1B4_1994	0.72	-2.5
2,279,207	-		Pf1N1B4_1994	0.72	-2.8
2,279,498	+				-0.0
2,279,498	+				-0.0
2,279,499	-				-1.1
2,279,597	+				-0.0
2,279,598	-				-0.0
2,279,777	-		Pf1N1B4_1995	0.36	-0.0
2,279,958	+		Pf1N1B4_1995	0.64	-0.0
2,279,958	+		Pf1N1B4_1995	0.64	-0.0
2,279,958	+		Pf1N1B4_1995	0.64	-1.8
2,279,959	-		Pf1N1B4_1995	0.64	-2.4
2,280,013	+		Pf1N1B4_1995	0.72	-0.4
2,280,013	+		Pf1N1B4_1995	0.72	-0.0
2,280,014	-		Pf1N1B4_1995	0.72	-0.0
2,280,014	-		Pf1N1B4_1995	0.72	-0.0
2,280,014	-		Pf1N1B4_1995	0.72	-1.6
2,280,017	+		Pf1N1B4_1995	0.73	-1.0
2,280,017	+		Pf1N1B4_1995	0.73	+1.0
2,280,017	+		Pf1N1B4_1995	0.73	-0.0
2,280,018	-		Pf1N1B4_1995	0.73	-0.0
2,280,018	-		Pf1N1B4_1995	0.73	-5.6
2,280,251	+		Pf1N1B4_1996	0.15	-2.7
2,280,252	-		Pf1N1B4_1996	0.15	-1.2
2,280,275	+		Pf1N1B4_1996	0.22	-0.0
2,280,278	+		Pf1N1B4_1996	0.23	-0.0
2,280,278	+		Pf1N1B4_1996	0.23	-0.0
2,280,278	+		Pf1N1B4_1996	0.23	-0.0
2,280,278	+		Pf1N1B4_1996	0.23	-0.0
2,280,279	-		Pf1N1B4_1996	0.23	-2.9
2,280,279	-		Pf1N1B4_1996	0.23	-0.0
2,280,279	-		Pf1N1B4_1996	0.23	-0.1
2,280,303	+		Pf1N1B4_1996	0.30	-1.3
2,280,303	+		Pf1N1B4_1996	0.30	-0.0
2,280,304	-		Pf1N1B4_1996	0.30	-0.0
2,280,362	+		Pf1N1B4_1996	0.47	-0.0
2,280,362	+		Pf1N1B4_1996	0.47	-0.7
2,280,362	+		Pf1N1B4_1996	0.47	-0.0
2,280,363	-		Pf1N1B4_1996	0.47	-0.0
2,280,363	-		Pf1N1B4_1996	0.47	-0.0