Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1140

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
1,277,943	+				-1.0
1,278,089	+				+1.8
1,278,300	+		Pf1N1B4_1139	0.20	-2.7
1,278,339	-		Pf1N1B4_1139	0.25	-1.0
1,278,347	-		Pf1N1B4_1139	0.27	-0.0
1,278,446	-		Pf1N1B4_1139	0.39	-0.0
1,278,562	+				-0.0
1,278,562	+		Pf1N1B4_1139	0.54	-1.8
1,278,569	-		Pf1N1B4_1139	0.55	-0.0
1,278,569	-		Pf1N1B4_1139	0.55	-0.0
1,278,569	-		Pf1N1B4_1139	0.55	+1.0
1,278,569	-		Pf1N1B4_1139	0.55	-1.5
1,278,569	-		Pf1N1B4_1139	0.55	-0.0
1,278,569	-		Pf1N1B4_1139	0.55	-0.0
1,278,901	-				-0.0
1,278,919	+				-1.0
1,278,919	+				-0.0
1,278,919	+				-1.8
1,278,919	+				-0.0
1,278,919	+				-1.4
1,278,919	+				-2.3
1,278,919	+				-2.2
1,278,919	+				-0.0
1,278,919	+				-0.0
1,278,919	+				-1.1
1,278,919	+				-0.0
1,278,919	+				-0.0
1,278,920	-				-3.0
1,278,920	-				-0.0
1,278,920	-				-0.0
1,278,920	-				-0.0
1,278,952	+				-1.9
1,278,952	+				-0.5
1,278,952	+				-3.2
1,278,952	+				-0.0
1,278,953	-				-1.2
1,278,953	-				-0.0
1,278,953	-				-0.7
1,278,953	-				-0.0
1,278,953	-				-0.5
1,278,953	-				-0.0
1,279,059	+		Pf1N1B4_1140	0.21	-1.9
1,279,060	-		Pf1N1B4_1140	0.21	-0.0
1,279,060	-		Pf1N1B4_1140	0.21	-0.0
1,279,219	+		Pf1N1B4_1140	0.44	-3.6
1,279,219	+		Pf1N1B4_1140	0.44	-0.0
1,279,220	-		Pf1N1B4_1140	0.44	-0.0
1,279,220	-		Pf1N1B4_1140	0.44	-0.0
1,279,339	+		Pf1N1B4_1140	0.62	-0.0
1,279,340	-		Pf1N1B4_1140	0.62	-0.0
1,279,340	-		Pf1N1B4_1140	0.62	-0.0
1,279,695	+				-0.0
1,279,695	+				-0.0
1,279,695	+				-1.4
1,279,696	-				-0.0
1,279,696	-				-1.5
1,279,696	-				-0.0
1,279,696	-				-0.4
1,279,994	+				-0.0
1,279,994	+				-1.8
1,279,994	+				-0.0
1,279,994	+				-0.0
1,279,994	+				-1.1
1,279,995	-				-0.0
1,279,995	-				-0.0
1,279,995	-				-2.7
1,279,995	-				-1.0
1,279,995	-				-0.0
1,280,005	+				-0.0
1,280,024	+				-0.0
1,280,024	+				-1.8
1,280,025	-				-0.0
1,280,375	+		Pf1N1B4_1141	0.25	-2.2
1,280,376	-		Pf1N1B4_1141	0.25	-2.5
1,280,376	-		Pf1N1B4_1141	0.25	-1.6
1,280,376	-		Pf1N1B4_1141	0.25	-0.0
1,280,460	+		Pf1N1B4_1141	0.29	-0.0
1,280,461	-		Pf1N1B4_1141	0.29	-1.1
1,280,588	+				-2.2
1,280,588	+		Pf1N1B4_1141	0.35	-0.0
1,280,589	-		Pf1N1B4_1141	0.35	-0.0