Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17030

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17010 and PGA1_c17020 are separated by 106 nucleotidesPGA1_c17020 and PGA1_c17030 overlap by 10 nucleotidesPGA1_c17030 and PGA1_c17040 are separated by 122 nucleotidesPGA1_c17040 and PGA1_c17050 are separated by 53 nucleotides PGA1_c17010: PGA1_c17010 - cytochrome c-type biogenesis protein CcmF, at 1,776,721 to 1,778,685 _c17010 PGA1_c17020: PGA1_c17020 - Protein of unknown function (DUF3154)., at 1,778,792 to 1,779,403 _c17020 PGA1_c17030: PGA1_c17030 - peptidoglycan binding domain-containing protein, at 1,779,394 to 1,780,005 _c17030 PGA1_c17040: PGA1_c17040 - cytochrome c-type biogenesis protein CcmE, at 1,780,128 to 1,780,571 _c17040 PGA1_c17050: PGA1_c17050 - N-acetyl-gamma-glutamyl-phosphate reductase ArgC, at 1,780,625 to 1,781,653 _c17050 Position (kb) 1779 1780 1781Strain fitness (log2 ratio) -2 -1 0 1at 1778.796 kb on - strandat 1778.802 kb on + strandat 1778.802 kb on + strandat 1778.812 kb on + strandat 1778.830 kb on + strandat 1778.859 kb on + strand, within PGA1_c17020at 1778.898 kb on - strand, within PGA1_c17020at 1778.916 kb on - strand, within PGA1_c17020at 1778.969 kb on - strand, within PGA1_c17020at 1779.232 kb on - strand, within PGA1_c17020at 1779.263 kb on - strand, within PGA1_c17020at 1779.339 kb on - strand, within PGA1_c17020at 1779.346 kb on - strandat 1779.387 kb on + strandat 1779.388 kb on - strandat 1779.450 kb on - strandat 1779.596 kb on - strand, within PGA1_c17030at 1779.877 kb on - strand, within PGA1_c17030at 1779.911 kb on - strand, within PGA1_c17030at 1779.945 kb on + strandat 1780.118 kb on - strandat 1780.588 kb on - strandat 1780.614 kb on + strandat 1780.880 kb on + strand, within PGA1_c17050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,778,796 - -0.1
1,778,802 + +0.7
1,778,802 + +0.2
1,778,812 + -0.1
1,778,830 + +0.2
1,778,859 + PGA1_c17020 0.11 -0.5
1,778,898 - PGA1_c17020 0.17 -0.2
1,778,916 - PGA1_c17020 0.20 -0.1
1,778,969 - PGA1_c17020 0.29 +0.7
1,779,232 - PGA1_c17020 0.72 -0.1
1,779,263 - PGA1_c17020 0.77 +0.3
1,779,339 - PGA1_c17020 0.89 +0.1
1,779,346 - +0.4
1,779,387 + -0.5
1,779,388 - -0.6
1,779,450 - +0.1
1,779,596 - PGA1_c17030 0.33 -1.7
1,779,877 - PGA1_c17030 0.79 +0.7
1,779,911 - PGA1_c17030 0.84 -1.4
1,779,945 + +0.6
1,780,118 - -0.1
1,780,588 - -0.7
1,780,614 + +0.2
1,780,880 + PGA1_c17050 0.25 -2.4

Or see this region's nucleotide sequence