Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02587 and CCNA_02588 are separated by 119 nucleotides CCNA_02588 and CCNA_02589 are separated by 159 nucleotides CCNA_02589 and CCNA_02590 are separated by 13 nucleotides
CCNA_02587: CCNA_02587 - PAS-family sensor histidine kinase, at 2,736,340 to 2,738,157
_02587
CCNA_02588: CCNA_02588 - aminopeptidase, at 2,738,277 to 2,739,206
_02588
CCNA_02589: CCNA_02589 - BolA-related transcriptional regulator, at 2,739,366 to 2,739,602
_02589
CCNA_02590: CCNA_02590 - aldo-keto reductase family protein, at 2,739,616 to 2,740,506
_02590
Position (kb)
2738
2739
2740 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2737.292 kb on + strand, within CCNA_02587 at 2737.314 kb on - strand, within CCNA_02587 at 2737.324 kb on + strand, within CCNA_02587 at 2737.329 kb on + strand, within CCNA_02587 at 2737.329 kb on + strand, within CCNA_02587 at 2737.337 kb on - strand, within CCNA_02587 at 2737.378 kb on + strand, within CCNA_02587 at 2737.378 kb on + strand, within CCNA_02587 at 2737.397 kb on - strand, within CCNA_02587 at 2737.498 kb on - strand, within CCNA_02587 at 2737.509 kb on - strand, within CCNA_02587 at 2737.575 kb on - strand, within CCNA_02587 at 2737.577 kb on + strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.586 kb on - strand, within CCNA_02587 at 2737.592 kb on + strand, within CCNA_02587 at 2737.600 kb on - strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.618 kb on - strand, within CCNA_02587 at 2737.618 kb on - strand, within CCNA_02587 at 2737.620 kb on + strand, within CCNA_02587 at 2737.634 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.677 kb on - strand, within CCNA_02587 at 2737.727 kb on + strand, within CCNA_02587 at 2737.727 kb on + strand, within CCNA_02587 at 2737.735 kb on - strand, within CCNA_02587 at 2737.744 kb on + strand, within CCNA_02587 at 2737.759 kb on - strand, within CCNA_02587 at 2737.761 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.792 kb on + strand, within CCNA_02587 at 2737.839 kb on + strand, within CCNA_02587 at 2737.862 kb on + strand, within CCNA_02587 at 2737.878 kb on - strand, within CCNA_02587 at 2737.919 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.940 kb on - strand, within CCNA_02587 at 2737.946 kb on + strand, within CCNA_02587 at 2738.050 kb on - strand at 2738.053 kb on - strand at 2738.069 kb on + strand at 2738.069 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.105 kb on - strand at 2738.120 kb on + strand at 2738.120 kb on + strand at 2738.120 kb on + strand at 2738.128 kb on - strand at 2738.128 kb on - strand at 2738.173 kb on - strand at 2738.201 kb on + strand at 2738.209 kb on - strand at 2738.257 kb on - strand at 2738.269 kb on - strand at 2738.300 kb on - strand at 2738.334 kb on - strand at 2738.339 kb on - strand at 2738.341 kb on + strand at 2738.344 kb on - strand at 2738.344 kb on - strand at 2738.362 kb on + strand at 2738.370 kb on - strand, within CCNA_02588 at 2738.388 kb on + strand, within CCNA_02588 at 2738.403 kb on + strand, within CCNA_02588 at 2738.411 kb on - strand, within CCNA_02588 at 2738.418 kb on + strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on - strand, within CCNA_02588 at 2738.509 kb on + strand, within CCNA_02588 at 2738.665 kb on - strand, within CCNA_02588 at 2738.723 kb on + strand, within CCNA_02588 at 2738.728 kb on + strand, within CCNA_02588 at 2738.729 kb on - strand, within CCNA_02588 at 2738.736 kb on - strand, within CCNA_02588 at 2738.747 kb on + strand, within CCNA_02588 at 2738.763 kb on - strand, within CCNA_02588 at 2738.824 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.913 kb on + strand, within CCNA_02588 at 2738.916 kb on - strand, within CCNA_02588 at 2738.975 kb on - strand, within CCNA_02588 at 2738.986 kb on - strand, within CCNA_02588 at 2739.144 kb on - strand at 2739.149 kb on - strand at 2739.209 kb on + strand at 2739.219 kb on + strand at 2739.283 kb on + strand at 2739.291 kb on - strand at 2739.361 kb on + strand at 2739.374 kb on + strand at 2739.385 kb on + strand at 2739.494 kb on - strand, within CCNA_02589 at 2739.496 kb on - strand, within CCNA_02589 at 2739.529 kb on + strand, within CCNA_02589 at 2739.537 kb on - strand, within CCNA_02589 at 2739.605 kb on - strand at 2739.606 kb on + strand at 2739.667 kb on - strand at 2739.678 kb on + strand at 2739.683 kb on - strand at 2739.713 kb on + strand, within CCNA_02590 at 2739.713 kb on + strand, within CCNA_02590 at 2739.715 kb on + strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.721 kb on - strand, within CCNA_02590 at 2739.738 kb on - strand, within CCNA_02590 at 2739.788 kb on - strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.793 kb on + strand, within CCNA_02590 at 2739.799 kb on + strand, within CCNA_02590 at 2739.886 kb on + strand, within CCNA_02590 at 2739.895 kb on - strand, within CCNA_02590 at 2739.910 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.926 kb on + strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.934 kb on - strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.969 kb on + strand, within CCNA_02590 at 2739.977 kb on - strand, within CCNA_02590 at 2739.984 kb on - strand, within CCNA_02590 at 2740.000 kb on - strand, within CCNA_02590 at 2740.011 kb on - strand, within CCNA_02590 at 2740.063 kb on + strand, within CCNA_02590 at 2740.093 kb on - strand, within CCNA_02590 at 2740.144 kb on - strand, within CCNA_02590
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,737,292 + CCNA_02587 0.52 +0.0 2,737,314 - CCNA_02587 0.54 +1.2 2,737,324 + CCNA_02587 0.54 +0.4 2,737,329 + CCNA_02587 0.54 +0.9 2,737,329 + CCNA_02587 0.54 -0.9 2,737,337 - CCNA_02587 0.55 +0.6 2,737,378 + CCNA_02587 0.57 -1.0 2,737,378 + CCNA_02587 0.57 -0.6 2,737,397 - CCNA_02587 0.58 +0.3 2,737,498 - CCNA_02587 0.64 +1.0 2,737,509 - CCNA_02587 0.64 +0.2 2,737,575 - CCNA_02587 0.68 -0.6 2,737,577 + CCNA_02587 0.68 +0.8 2,737,580 - CCNA_02587 0.68 +1.1 2,737,580 - CCNA_02587 0.68 -1.5 2,737,580 - CCNA_02587 0.68 -1.5 2,737,586 - CCNA_02587 0.69 +0.4 2,737,592 + CCNA_02587 0.69 -1.0 2,737,600 - CCNA_02587 0.69 +0.3 2,737,610 + CCNA_02587 0.70 +0.4 2,737,610 + CCNA_02587 0.70 -0.5 2,737,610 + CCNA_02587 0.70 -0.2 2,737,618 - CCNA_02587 0.70 +0.3 2,737,618 - CCNA_02587 0.70 +0.3 2,737,620 + CCNA_02587 0.70 +0.1 2,737,634 + CCNA_02587 0.71 -1.4 2,737,656 + CCNA_02587 0.72 +0.1 2,737,656 + CCNA_02587 0.72 -0.7 2,737,656 + CCNA_02587 0.72 +0.6 2,737,656 + CCNA_02587 0.72 -0.1 2,737,656 + CCNA_02587 0.72 +0.5 2,737,664 - CCNA_02587 0.73 -0.7 2,737,664 - CCNA_02587 0.73 -0.1 2,737,664 - CCNA_02587 0.73 +1.2 2,737,664 - CCNA_02587 0.73 -0.3 2,737,664 - CCNA_02587 0.73 +0.5 2,737,664 - CCNA_02587 0.73 +0.1 2,737,664 - CCNA_02587 0.73 +0.3 2,737,664 - CCNA_02587 0.73 +0.8 2,737,664 - CCNA_02587 0.73 -0.7 2,737,664 - CCNA_02587 0.73 -0.2 2,737,677 - CCNA_02587 0.74 +0.1 2,737,727 + CCNA_02587 0.76 -0.6 2,737,727 + CCNA_02587 0.76 +0.1 2,737,735 - CCNA_02587 0.77 -0.3 2,737,744 + CCNA_02587 0.77 -1.5 2,737,759 - CCNA_02587 0.78 -0.1 2,737,761 + CCNA_02587 0.78 +0.1 2,737,778 + CCNA_02587 0.79 +1.4 2,737,778 + CCNA_02587 0.79 -0.3 2,737,778 + CCNA_02587 0.79 +1.3 2,737,778 + CCNA_02587 0.79 -0.3 2,737,786 - CCNA_02587 0.80 -1.0 2,737,786 - CCNA_02587 0.80 -0.1 2,737,786 - CCNA_02587 0.80 -0.1 2,737,792 + CCNA_02587 0.80 +0.6 2,737,839 + CCNA_02587 0.82 -0.6 2,737,862 + CCNA_02587 0.84 +0.9 2,737,878 - CCNA_02587 0.85 +0.6 2,737,919 + CCNA_02587 0.87 +2.4 2,737,925 + CCNA_02587 0.87 -0.6 2,737,925 + CCNA_02587 0.87 -1.9 2,737,925 + CCNA_02587 0.87 -0.3 2,737,925 + CCNA_02587 0.87 -0.2 2,737,925 + CCNA_02587 0.87 +0.6 2,737,933 - CCNA_02587 0.88 -1.0 2,737,933 - CCNA_02587 0.88 -0.9 2,737,933 - CCNA_02587 0.88 +0.2 2,737,933 - CCNA_02587 0.88 -0.5 2,737,933 - CCNA_02587 0.88 +1.2 2,737,940 - CCNA_02587 0.88 -0.2 2,737,946 + CCNA_02587 0.88 -1.4 2,738,050 - +0.5 2,738,053 - +0.6 2,738,069 + +0.9 2,738,069 + -0.4 2,738,097 + -1.4 2,738,097 + +0.3 2,738,097 + -0.3 2,738,097 + -0.9 2,738,105 - +0.5 2,738,120 + -0.6 2,738,120 + -0.4 2,738,120 + -0.0 2,738,128 - +1.0 2,738,128 - +1.6 2,738,173 - +0.8 2,738,201 + -0.8 2,738,209 - -0.0 2,738,257 - -0.3 2,738,269 - +0.1 2,738,300 - -0.2 2,738,334 - +0.1 2,738,339 - -0.4 2,738,341 + -0.4 2,738,344 - +0.4 2,738,344 - +0.4 2,738,362 + +0.6 2,738,370 - CCNA_02588 0.10 -0.6 2,738,388 + CCNA_02588 0.12 -0.6 2,738,403 + CCNA_02588 0.14 -0.6 2,738,411 - CCNA_02588 0.14 +0.6 2,738,418 + CCNA_02588 0.15 -0.9 2,738,421 - CCNA_02588 0.15 +0.0 2,738,421 - CCNA_02588 0.15 +0.3 2,738,493 + CCNA_02588 0.23 +0.7 2,738,493 + CCNA_02588 0.23 +0.8 2,738,493 - CCNA_02588 0.23 -0.3 2,738,509 + CCNA_02588 0.25 +0.8 2,738,665 - CCNA_02588 0.42 +0.2 2,738,723 + CCNA_02588 0.48 +0.2 2,738,728 + CCNA_02588 0.48 -1.1 2,738,729 - CCNA_02588 0.49 +0.3 2,738,736 - CCNA_02588 0.49 +0.1 2,738,747 + CCNA_02588 0.51 -1.0 2,738,763 - CCNA_02588 0.52 -0.3 2,738,824 - CCNA_02588 0.59 +0.5 2,738,840 - CCNA_02588 0.61 -0.1 2,738,840 - CCNA_02588 0.61 -0.0 2,738,840 - CCNA_02588 0.61 +0.9 2,738,892 - CCNA_02588 0.66 +0.7 2,738,892 - CCNA_02588 0.66 +0.4 2,738,892 - CCNA_02588 0.66 +0.6 2,738,913 + CCNA_02588 0.68 +0.5 2,738,916 - CCNA_02588 0.69 +0.1 2,738,975 - CCNA_02588 0.75 -0.4 2,738,986 - CCNA_02588 0.76 -0.1 2,739,144 - +0.7 2,739,149 - +0.3 2,739,209 + -1.3 2,739,219 + -0.3 2,739,283 + +0.5 2,739,291 - -1.6 2,739,361 + +0.2 2,739,374 + +0.5 2,739,385 + +0.2 2,739,494 - CCNA_02589 0.54 +0.3 2,739,496 - CCNA_02589 0.55 -0.2 2,739,529 + CCNA_02589 0.69 +0.2 2,739,537 - CCNA_02589 0.72 +1.1 2,739,605 - -0.3 2,739,606 + +0.2 2,739,667 - +0.4 2,739,678 + +1.6 2,739,683 - +0.2 2,739,713 + CCNA_02590 0.11 +0.2 2,739,713 + CCNA_02590 0.11 +0.1 2,739,715 + CCNA_02590 0.11 +0.1 2,739,721 - CCNA_02590 0.12 -0.3 2,739,721 - CCNA_02590 0.12 -2.1 2,739,738 - CCNA_02590 0.14 -0.0 2,739,788 - CCNA_02590 0.19 +0.2 2,739,793 + CCNA_02590 0.20 +0.4 2,739,793 + CCNA_02590 0.20 +0.3 2,739,799 + CCNA_02590 0.21 +0.5 2,739,886 + CCNA_02590 0.30 -0.0 2,739,895 - CCNA_02590 0.31 -1.9 2,739,910 + CCNA_02590 0.33 +0.0 2,739,926 + CCNA_02590 0.35 +0.6 2,739,926 + CCNA_02590 0.35 +0.3 2,739,934 - CCNA_02590 0.36 +0.5 2,739,934 - CCNA_02590 0.36 -0.6 2,739,934 - CCNA_02590 0.36 -1.4 2,739,969 + CCNA_02590 0.40 -0.0 2,739,969 + CCNA_02590 0.40 +0.5 2,739,977 - CCNA_02590 0.41 +0.2 2,739,984 - CCNA_02590 0.41 -0.3 2,740,000 - CCNA_02590 0.43 +0.2 2,740,011 - CCNA_02590 0.44 -0.5 2,740,063 + CCNA_02590 0.50 +0.2 2,740,093 - CCNA_02590 0.54 -0.5 2,740,144 - CCNA_02590 0.59 -0.0
Or see this region's nucleotide sequence