Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02334

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02333 and CCNA_02334 are separated by 117 nucleotidesCCNA_02334 and CCNA_02335 are separated by 62 nucleotidesCCNA_02335 and CCNA_02336 overlap by 26 nucleotides CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422 _02333 CCNA_02334: CCNA_02334 - transcriptional regulator of stalk biogenesis staR, at 2,475,540 to 2,475,935 _02334 CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834 _02335 CCNA_02336: CCNA_02336 - lysophospholipase L2, at 2,476,809 to 2,477,789 _02336 Position (kb) 2475 2476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2474.544 kb on - strandat 2475.397 kb on + strandat 2475.397 kb on + strandat 2475.397 kb on + strandat 2475.403 kb on + strandat 2475.519 kb on + strandat 2475.519 kb on + strandat 2475.552 kb on + strandat 2475.565 kb on + strandat 2475.565 kb on + strandat 2475.565 kb on + strandat 2475.581 kb on - strand, within CCNA_02334at 2475.583 kb on - strand, within CCNA_02334at 2475.600 kb on + strand, within CCNA_02334at 2475.610 kb on + strand, within CCNA_02334at 2475.668 kb on - strand, within CCNA_02334at 2475.723 kb on + strand, within CCNA_02334at 2475.731 kb on - strand, within CCNA_02334at 2475.761 kb on + strand, within CCNA_02334at 2475.770 kb on - strand, within CCNA_02334at 2475.804 kb on + strand, within CCNA_02334at 2475.810 kb on + strand, within CCNA_02334at 2475.834 kb on + strand, within CCNA_02334at 2475.839 kb on + strand, within CCNA_02334at 2475.839 kb on + strand, within CCNA_02334at 2475.847 kb on + strand, within CCNA_02334at 2475.887 kb on + strand, within CCNA_02334at 2475.893 kb on + strand, within CCNA_02334at 2475.962 kb on + strandat 2475.982 kb on + strandat 2475.982 kb on + strandat 2475.990 kb on - strandat 2475.990 kb on - strandat 2475.990 kb on - strandat 2476.054 kb on - strandat 2476.084 kb on + strand, within CCNA_02335at 2476.094 kb on + strand, within CCNA_02335at 2476.094 kb on + strand, within CCNA_02335at 2476.108 kb on + strand, within CCNA_02335at 2476.121 kb on + strand, within CCNA_02335at 2476.255 kb on - strand, within CCNA_02335at 2476.257 kb on - strand, within CCNA_02335at 2476.282 kb on - strand, within CCNA_02335at 2476.333 kb on + strand, within CCNA_02335at 2476.361 kb on - strand, within CCNA_02335at 2476.396 kb on + strand, within CCNA_02335at 2476.434 kb on - strand, within CCNA_02335at 2476.600 kb on - strand, within CCNA_02335at 2476.613 kb on + strand, within CCNA_02335at 2476.802 kb on + strandat 2476.810 kb on - strandat 2476.815 kb on - strandat 2476.820 kb on - strandat 2476.887 kb on - strandat 2476.887 kb on - strandat 2476.887 kb on - strandat 2476.930 kb on + strand, within CCNA_02336

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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2,474,544 - -0.2
2,475,397 + -0.9
2,475,397 + -0.8
2,475,397 + +0.2
2,475,403 + -0.9
2,475,519 + -1.5
2,475,519 + -0.9
2,475,552 + -0.1
2,475,565 + +1.3
2,475,565 + +0.2
2,475,565 + -0.6
2,475,581 - CCNA_02334 0.10 +0.5
2,475,583 - CCNA_02334 0.11 +0.1
2,475,600 + CCNA_02334 0.15 +0.5
2,475,610 + CCNA_02334 0.18 +0.6
2,475,668 - CCNA_02334 0.32 +0.4
2,475,723 + CCNA_02334 0.46 +0.6
2,475,731 - CCNA_02334 0.48 +0.1
2,475,761 + CCNA_02334 0.56 +1.7
2,475,770 - CCNA_02334 0.58 +0.7
2,475,804 + CCNA_02334 0.67 -0.1
2,475,810 + CCNA_02334 0.68 +0.3
2,475,834 + CCNA_02334 0.74 +0.3
2,475,839 + CCNA_02334 0.76 +0.7
2,475,839 + CCNA_02334 0.76 +0.2
2,475,847 + CCNA_02334 0.78 +0.8
2,475,887 + CCNA_02334 0.88 +0.2
2,475,893 + CCNA_02334 0.89 +0.5
2,475,962 + +0.7
2,475,982 + -1.0
2,475,982 + +0.6
2,475,990 - -0.9
2,475,990 - -0.7
2,475,990 - +0.1
2,476,054 - -2.2
2,476,084 + CCNA_02335 0.10 -3.2
2,476,094 + CCNA_02335 0.11 -3.5
2,476,094 + CCNA_02335 0.11 -3.0
2,476,108 + CCNA_02335 0.13 -3.8
2,476,121 + CCNA_02335 0.15 -3.3
2,476,255 - CCNA_02335 0.31 -1.2
2,476,257 - CCNA_02335 0.31 -2.9
2,476,282 - CCNA_02335 0.34 -0.5
2,476,333 + CCNA_02335 0.40 -3.4
2,476,361 - CCNA_02335 0.43 -3.0
2,476,396 + CCNA_02335 0.48 -3.6
2,476,434 - CCNA_02335 0.52 -2.3
2,476,600 - CCNA_02335 0.72 -4.6
2,476,613 + CCNA_02335 0.73 -1.9
2,476,802 + -2.5
2,476,810 - -3.2
2,476,815 - -1.3
2,476,820 - -0.5
2,476,887 - +1.3
2,476,887 - +0.6
2,476,887 - -0.7
2,476,930 + CCNA_02336 0.12 -0.1

Or see this region's nucleotide sequence