Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02333 and CCNA_02334 are separated by 117 nucleotides CCNA_02334 and CCNA_02335 are separated by 62 nucleotides CCNA_02335 and CCNA_02336 overlap by 26 nucleotides
CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422
_02333
CCNA_02334: CCNA_02334 - transcriptional regulator of stalk biogenesis staR, at 2,475,540 to 2,475,935
_02334
CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834
_02335
CCNA_02336: CCNA_02336 - lysophospholipase L2, at 2,476,809 to 2,477,789
_02336
Position (kb)
2475
2476 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2474.544 kb on - strand at 2475.397 kb on + strand at 2475.397 kb on + strand at 2475.397 kb on + strand at 2475.403 kb on + strand at 2475.519 kb on + strand at 2475.519 kb on + strand at 2475.552 kb on + strand at 2475.565 kb on + strand at 2475.565 kb on + strand at 2475.565 kb on + strand at 2475.581 kb on - strand, within CCNA_02334 at 2475.583 kb on - strand, within CCNA_02334 at 2475.600 kb on + strand, within CCNA_02334 at 2475.610 kb on + strand, within CCNA_02334 at 2475.668 kb on - strand, within CCNA_02334 at 2475.723 kb on + strand, within CCNA_02334 at 2475.731 kb on - strand, within CCNA_02334 at 2475.761 kb on + strand, within CCNA_02334 at 2475.770 kb on - strand, within CCNA_02334 at 2475.804 kb on + strand, within CCNA_02334 at 2475.810 kb on + strand, within CCNA_02334 at 2475.834 kb on + strand, within CCNA_02334 at 2475.839 kb on + strand, within CCNA_02334 at 2475.839 kb on + strand, within CCNA_02334 at 2475.847 kb on + strand, within CCNA_02334 at 2475.887 kb on + strand, within CCNA_02334 at 2475.893 kb on + strand, within CCNA_02334 at 2475.962 kb on + strand at 2475.982 kb on + strand at 2475.982 kb on + strand at 2475.990 kb on - strand at 2475.990 kb on - strand at 2475.990 kb on - strand at 2476.054 kb on - strand at 2476.084 kb on + strand, within CCNA_02335 at 2476.094 kb on + strand, within CCNA_02335 at 2476.094 kb on + strand, within CCNA_02335 at 2476.108 kb on + strand, within CCNA_02335 at 2476.121 kb on + strand, within CCNA_02335 at 2476.255 kb on - strand, within CCNA_02335 at 2476.257 kb on - strand, within CCNA_02335 at 2476.282 kb on - strand, within CCNA_02335 at 2476.333 kb on + strand, within CCNA_02335 at 2476.361 kb on - strand, within CCNA_02335 at 2476.396 kb on + strand, within CCNA_02335 at 2476.434 kb on - strand, within CCNA_02335 at 2476.600 kb on - strand, within CCNA_02335 at 2476.613 kb on + strand, within CCNA_02335 at 2476.802 kb on + strand at 2476.810 kb on - strand at 2476.815 kb on - strand at 2476.820 kb on - strand at 2476.887 kb on - strand at 2476.887 kb on - strand at 2476.887 kb on - strand at 2476.930 kb on + strand, within CCNA_02336
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,474,544 - -0.2 2,475,397 + -0.9 2,475,397 + -0.8 2,475,397 + +0.2 2,475,403 + -0.9 2,475,519 + -1.5 2,475,519 + -0.9 2,475,552 + -0.1 2,475,565 + +1.3 2,475,565 + +0.2 2,475,565 + -0.6 2,475,581 - CCNA_02334 0.10 +0.5 2,475,583 - CCNA_02334 0.11 +0.1 2,475,600 + CCNA_02334 0.15 +0.5 2,475,610 + CCNA_02334 0.18 +0.6 2,475,668 - CCNA_02334 0.32 +0.4 2,475,723 + CCNA_02334 0.46 +0.6 2,475,731 - CCNA_02334 0.48 +0.1 2,475,761 + CCNA_02334 0.56 +1.7 2,475,770 - CCNA_02334 0.58 +0.7 2,475,804 + CCNA_02334 0.67 -0.1 2,475,810 + CCNA_02334 0.68 +0.3 2,475,834 + CCNA_02334 0.74 +0.3 2,475,839 + CCNA_02334 0.76 +0.7 2,475,839 + CCNA_02334 0.76 +0.2 2,475,847 + CCNA_02334 0.78 +0.8 2,475,887 + CCNA_02334 0.88 +0.2 2,475,893 + CCNA_02334 0.89 +0.5 2,475,962 + +0.7 2,475,982 + -1.0 2,475,982 + +0.6 2,475,990 - -0.9 2,475,990 - -0.7 2,475,990 - +0.1 2,476,054 - -2.2 2,476,084 + CCNA_02335 0.10 -3.2 2,476,094 + CCNA_02335 0.11 -3.5 2,476,094 + CCNA_02335 0.11 -3.0 2,476,108 + CCNA_02335 0.13 -3.8 2,476,121 + CCNA_02335 0.15 -3.3 2,476,255 - CCNA_02335 0.31 -1.2 2,476,257 - CCNA_02335 0.31 -2.9 2,476,282 - CCNA_02335 0.34 -0.5 2,476,333 + CCNA_02335 0.40 -3.4 2,476,361 - CCNA_02335 0.43 -3.0 2,476,396 + CCNA_02335 0.48 -3.6 2,476,434 - CCNA_02335 0.52 -2.3 2,476,600 - CCNA_02335 0.72 -4.6 2,476,613 + CCNA_02335 0.73 -1.9 2,476,802 + -2.5 2,476,810 - -3.2 2,476,815 - -1.3 2,476,820 - -0.5 2,476,887 - +1.3 2,476,887 - +0.6 2,476,887 - -0.7 2,476,930 + CCNA_02336 0.12 -0.1
Or see this region's nucleotide sequence