Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01560

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
1,675,984	+				+1.6
1,676,070	-		CCNA_01559	0.14	-0.2
1,676,087	-		CCNA_01559	0.17	-0.3
1,676,116	+		CCNA_01559	0.20	-2.5
1,676,152	-		CCNA_01559	0.25	-0.5
1,676,169	+		CCNA_01559	0.27	-0.3
1,676,220	-		CCNA_01559	0.34	-1.0
1,676,263	+				+1.0
1,676,311	-		CCNA_01559	0.46	-0.2
1,676,311	-		CCNA_01559	0.46	+0.7
1,676,312	-		CCNA_01559	0.46	-0.3
1,676,326	+		CCNA_01559	0.48	-0.4
1,676,326	+		CCNA_01559	0.48	+0.7
1,676,331	+		CCNA_01559	0.48	-0.4
1,676,339	-		CCNA_01559	0.49	-0.8
1,676,348	+		CCNA_01559	0.51	+0.7
1,676,348	+		CCNA_01559	0.51	-0.5
1,676,376	+		CCNA_01559	0.54	-1.6
1,676,376	+		CCNA_01559	0.54	+1.0
1,676,376	+		CCNA_01559	0.54	+0.4
1,676,383	+		CCNA_01559	0.55	-0.1
1,676,416	-		CCNA_01559	0.59	-0.1
1,676,416	-		CCNA_01559	0.59	-0.1
1,676,433	+		CCNA_01559	0.62	+0.4
1,676,550	+		CCNA_01559	0.77	+1.1
1,676,557	+		CCNA_01559	0.78	+0.6
1,676,569	+		CCNA_01559	0.79	+0.3
1,676,569	+		CCNA_01559	0.79	+1.3
1,676,577	-		CCNA_01559	0.80	+0.1
1,676,687	+				+0.2
1,676,794	+				-1.6
1,676,873	-				-2.5
1,676,873	-				-0.6
1,676,900	+				-2.2
1,676,900	+				-1.4
1,676,921	+				-1.7
1,676,929	-				-4.8
1,677,014	+				-3.4
1,677,057	+				-1.6
1,677,079	+				-1.8
1,677,114	+				-4.0
1,677,114	+				-1.1
1,677,122	-				-1.1
1,677,134	-				-2.6
1,677,134	-				-3.1
1,677,159	+				-3.0
1,677,162	-				-1.1
1,677,191	-		CCNA_01560	0.10	-2.2
1,677,236	-		CCNA_01560	0.12	-3.6
1,677,265	-		CCNA_01560	0.13	-2.7
1,677,275	-		CCNA_01560	0.13	-1.8
1,677,283	-		CCNA_01560	0.14	-3.0
1,677,318	+		CCNA_01560	0.15	-3.4
1,677,344	-		CCNA_01560	0.16	-2.8
1,677,367	-		CCNA_01560	0.17	-4.5
1,677,462	-		CCNA_01560	0.20	-2.8
1,677,463	+		CCNA_01560	0.20	-4.7
1,677,478	+		CCNA_01560	0.21	-3.3
1,677,478	+		CCNA_01560	0.21	-2.6
1,677,496	+		CCNA_01560	0.21	-3.0
1,677,496	+		CCNA_01560	0.21	-1.4
1,677,496	+		CCNA_01560	0.21	-3.2
1,677,509	-		CCNA_01560	0.22	-1.8
1,677,519	+		CCNA_01560	0.22	-0.1
1,677,519	+		CCNA_01560	0.22	-2.6
1,677,534	+		CCNA_01560	0.23	-2.4
1,677,606	+		CCNA_01560	0.25	-3.3
1,677,671	+		CCNA_01560	0.28	-3.2
1,677,729	-		CCNA_01560	0.30	-0.9
1,677,755	-		CCNA_01560	0.31	+0.0
1,677,765	-		CCNA_01560	0.31	-3.2
1,677,779	-		CCNA_01560	0.32	-2.9
1,677,868	-		CCNA_01560	0.35	-0.4
1,677,869	-		CCNA_01560	0.35	-3.4
1,677,869	-		CCNA_01560	0.35	-1.0
1,677,903	-		CCNA_01560	0.36	-0.9
1,677,952	-		CCNA_01560	0.38	-2.9
1,677,964	+		CCNA_01560	0.38	-2.7
1,677,972	-		CCNA_01560	0.39	-3.9
1,677,987	+		CCNA_01560	0.39	-3.0
1,678,000	-		CCNA_01560	0.40	-1.7
1,678,052	+		CCNA_01560	0.42	-3.7
1,678,052	+		CCNA_01560	0.42	-3.7
1,678,052	+		CCNA_01560	0.42	-2.5
1,678,098	-				-1.1
1,678,098	-		CCNA_01560	0.43	-1.9
1,678,109	+		CCNA_01560	0.44	-1.9
1,678,112	-		CCNA_01560	0.44	-3.1
1,678,113	+		CCNA_01560	0.44	-2.4
1,678,140	-		CCNA_01560	0.45	-1.5
1,678,141	+		CCNA_01560	0.45	-2.6
1,678,142	+		CCNA_01560	0.45	-2.6
1,678,142	+		CCNA_01560	0.45	-3.5
1,678,142	+		CCNA_01560	0.45	-2.8
1,678,150	-		CCNA_01560	0.45	-2.3
1,678,150	-		CCNA_01560	0.45	-0.6
1,678,161	+		CCNA_01560	0.46	-0.7
1,678,221	-		CCNA_01560	0.48	-2.6
1,678,255	+		CCNA_01560	0.49	-4.0
1,678,332	-		CCNA_01560	0.52	-3.1
1,678,375	+		CCNA_01560	0.54	-2.3
1,678,383	-		CCNA_01560	0.54	-3.3
1,678,393	+		CCNA_01560	0.54	-1.4
1,678,449	+		CCNA_01560	0.56	-2.9
1,678,457	-		CCNA_01560	0.57	-1.9
1,678,462	+		CCNA_01560	0.57	-3.7
1,678,467	+				-0.4
1,678,467	+		CCNA_01560	0.57	-2.0
1,678,467	+		CCNA_01560	0.57	-3.9
1,678,467	+		CCNA_01560	0.57	-2.8
1,678,470	-		CCNA_01560	0.57	-1.2
1,678,475	-		CCNA_01560	0.57	-2.8
1,678,475	-		CCNA_01560	0.57	+0.0
1,678,475	-		CCNA_01560	0.57	-1.6
1,678,478	+		CCNA_01560	0.57	-2.2
1,678,478	+		CCNA_01560	0.57	-2.9
1,678,497	+		CCNA_01560	0.58	+0.6
1,678,497	+		CCNA_01560	0.58	-2.0
1,678,505	-		CCNA_01560	0.58	-1.9
1,678,510	-		CCNA_01560	0.58	-2.8
1,678,534	+		CCNA_01560	0.59	-2.4
1,678,552	-		CCNA_01560	0.60	-2.4
1,678,748	-		CCNA_01560	0.67	-3.7
1,678,768	-		CCNA_01560	0.68	-3.4
1,678,770	+		CCNA_01560	0.68	-2.2
1,678,770	+		CCNA_01560	0.68	-2.7
1,678,778	-		CCNA_01560	0.68	-1.1
1,678,778	-				+0.6
1,678,778	-		CCNA_01560	0.68	-1.7
1,678,817	-		CCNA_01560	0.70	-3.5
1,678,819	+		CCNA_01560	0.70	-2.0
1,678,819	+		CCNA_01560	0.70	-4.4
1,678,819	+		CCNA_01560	0.70	-2.7
1,678,819	+		CCNA_01560	0.70	-2.4
1,678,901	-		CCNA_01560	0.73	-1.4
1,678,921	+		CCNA_01560	0.74	-2.9
1,678,921	+		CCNA_01560	0.74	-2.8
1,678,921	+		CCNA_01560	0.74	-2.7
1,678,974	-		CCNA_01560	0.75	-3.2
1,678,989	+		CCNA_01560	0.76	-1.3
1,678,989	+		CCNA_01560	0.76	-1.8
1,678,989	+		CCNA_01560	0.76	-2.9
1,678,993	-		CCNA_01560	0.76	-2.4
1,678,998	-		CCNA_01560	0.76	-3.8
1,678,998	-		CCNA_01560	0.76	-2.9
1,678,998	-		CCNA_01560	0.76	-3.5
1,679,001	+		CCNA_01560	0.76	-4.3
1,679,009	+		CCNA_01560	0.77	-1.9
1,679,017	-		CCNA_01560	0.77	-3.4
1,679,041	+		CCNA_01560	0.78	-3.4
1,679,127	+		CCNA_01560	0.81	-2.0
1,679,127	+		CCNA_01560	0.81	-1.7
1,679,142	+		CCNA_01560	0.82	-3.1
1,679,153	+		CCNA_01560	0.82	-2.5
1,679,153	+		CCNA_01560	0.82	-2.4
1,679,161	+		CCNA_01560	0.82	-4.3
1,679,161	-		CCNA_01560	0.82	+2.2
1,679,161	-		CCNA_01560	0.82	-1.9
1,679,202	+		CCNA_01560	0.84	-3.3
1,679,205	-		CCNA_01560	0.84	-3.1
1,679,288	+		CCNA_01560	0.87	-3.5
1,679,310	+		CCNA_01560	0.88	-4.0
1,679,314	-		CCNA_01560	0.88	-2.8
1,679,317	+		CCNA_01560	0.88	-1.9
1,679,370	+		CCNA_01560	0.90	-1.9
1,679,370	+		CCNA_01560	0.90	-3.3
1,679,378	-				-2.3
1,679,378	-				-2.7
1,679,378	-				-1.7
1,679,397	+				-3.2
1,679,409	+				-1.6
1,679,426	+				-3.4
1,679,426	+				-3.9
1,679,434	-				-3.0
1,679,460	+				-3.0
1,679,469	-				-2.3
1,679,494	+				-3.0
1,679,495	-				-2.2
1,679,513	-				-2.4
1,679,520	+				-3.1
1,679,858	-		CCNA_01561	0.16	-0.1
1,679,909	-		CCNA_01561	0.29	-0.1
1,679,955	-		CCNA_01561	0.41	-0.5
1,679,955	-		CCNA_01561	0.41	-0.3
1,679,977	-		CCNA_01561	0.47	-0.9
1,679,977	-		CCNA_01561	0.47	-0.1
1,680,025	+		CCNA_01561	0.59	+0.7
1,680,059	-		CCNA_01561	0.68	-1.6
1,680,075	+		CCNA_01561	0.72	+0.0
1,680,075	+		CCNA_01561	0.72	-0.1
1,680,075	+		CCNA_01561	0.72	+0.6
1,680,082	+		CCNA_01561	0.74	+0.0
1,680,178	+				-2.0
1,680,492	+		CCNA_01562	0.47	-3.2
1,680,533	+		CCNA_01562	0.53	-1.5
1,680,557	+		CCNA_01562	0.57	-5.0
1,680,565	-		CCNA_01562	0.58	-0.7
1,680,588	+		CCNA_01562	0.61	-1.9
1,680,588	+		CCNA_01562	0.61	-3.0