Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2337

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2334 and Dshi_2335 are separated by 227 nucleotidesDshi_2335 and Dshi_2336 are separated by 77 nucleotidesDshi_2336 and Dshi_2337 are separated by 39 nucleotidesDshi_2337 and Dshi_2338 overlap by 4 nucleotides Dshi_2334: Dshi_2334 - fumarate hydratase, class II (RefSeq), at 2,463,610 to 2,465,007 _2334 Dshi_2335: Dshi_2335 - arylsulfate sulfotransferase-like protein (RefSeq), at 2,465,235 to 2,465,534 _2335 Dshi_2336: Dshi_2336 - hypothetical protein (RefSeq), at 2,465,612 to 2,465,803 _2336 Dshi_2337: Dshi_2337 - cytochrome P450 (RefSeq), at 2,465,843 to 2,467,219 _2337 Dshi_2338: Dshi_2338 - hypothetical protein (RefSeq), at 2,467,216 to 2,468,406 _2338 Position (kb) 2465 2466 2467 2468Strain fitness (log2 ratio) -1 0 1 2 3at 2465.027 kb on + strandat 2465.344 kb on + strand, within Dshi_2335at 2465.398 kb on - strand, within Dshi_2335at 2465.549 kb on - strandat 2465.568 kb on - strandat 2465.741 kb on + strand, within Dshi_2336at 2465.749 kb on - strand, within Dshi_2336at 2465.798 kb on - strandat 2465.875 kb on + strandat 2466.048 kb on - strand, within Dshi_2337at 2466.122 kb on - strand, within Dshi_2337at 2466.300 kb on - strand, within Dshi_2337at 2466.495 kb on + strand, within Dshi_2337at 2466.688 kb on - strand, within Dshi_2337at 2466.899 kb on - strand, within Dshi_2337at 2466.927 kb on + strand, within Dshi_2337at 2467.025 kb on + strand, within Dshi_2337at 2467.091 kb on - strandat 2467.133 kb on + strandat 2467.268 kb on + strandat 2467.319 kb on + strandat 2467.330 kb on + strandat 2467.393 kb on - strand, within Dshi_2338at 2467.441 kb on + strand, within Dshi_2338at 2467.441 kb on + strand, within Dshi_2338at 2467.535 kb on + strand, within Dshi_2338at 2467.557 kb on - strand, within Dshi_2338at 2467.594 kb on + strand, within Dshi_2338at 2467.805 kb on - strand, within Dshi_2338at 2467.810 kb on + strand, within Dshi_2338at 2467.824 kb on - strand, within Dshi_2338at 2467.877 kb on + strand, within Dshi_2338at 2468.015 kb on + strand, within Dshi_2338at 2468.109 kb on - strand, within Dshi_2338

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,465,027 + +0.4
2,465,344 + Dshi_2335 0.36 +0.8
2,465,398 - Dshi_2335 0.54 +1.0
2,465,549 - +1.2
2,465,568 - -0.2
2,465,741 + Dshi_2336 0.67 +0.2
2,465,749 - Dshi_2336 0.71 -0.7
2,465,798 - +0.2
2,465,875 + +0.4
2,466,048 - Dshi_2337 0.15 +0.2
2,466,122 - Dshi_2337 0.20 +0.7
2,466,300 - Dshi_2337 0.33 +2.8
2,466,495 + Dshi_2337 0.47 +0.4
2,466,688 - Dshi_2337 0.61 +0.4
2,466,899 - Dshi_2337 0.77 +0.8
2,466,927 + Dshi_2337 0.79 +1.0
2,467,025 + Dshi_2337 0.86 +0.1
2,467,091 - -0.2
2,467,133 + -0.2
2,467,268 + -1.1
2,467,319 + +0.9
2,467,330 + -0.0
2,467,393 - Dshi_2338 0.15 +0.5
2,467,441 + Dshi_2338 0.19 -1.2
2,467,441 + Dshi_2338 0.19 +0.7
2,467,535 + Dshi_2338 0.27 -0.1
2,467,557 - Dshi_2338 0.29 +0.2
2,467,594 + Dshi_2338 0.32 +0.3
2,467,805 - Dshi_2338 0.49 +0.6
2,467,810 + Dshi_2338 0.50 -1.0
2,467,824 - Dshi_2338 0.51 +0.9
2,467,877 + Dshi_2338 0.55 +0.9
2,468,015 + Dshi_2338 0.67 -0.1
2,468,109 - Dshi_2338 0.75 +0.3

Or see this region's nucleotide sequence