Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0376 and Dshi_0377 are separated by 16 nucleotides Dshi_0377 and Dshi_0378 are separated by 242 nucleotides Dshi_0378 and Dshi_0379 are separated by 132 nucleotides Dshi_0379 and Dshi_0380 are separated by 49 nucleotides
Dshi_0376: Dshi_0376 - inner-membrane translocator (RefSeq), at 359,118 to 360,107
_0376
Dshi_0377: Dshi_0377 - hypothetical protein (RefSeq), at 360,124 to 360,432
_0377
Dshi_0378: Dshi_0378 - hypothetical protein (RefSeq), at 360,675 to 360,929
_0378
Dshi_0379: Dshi_0379 - inner-membrane translocator (RefSeq), at 361,062 to 362,138
_0379
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1
2 at 360.102 kb on + strand at 360.108 kb on - strand at 360.130 kb on - strand at 360.198 kb on + strand, within Dshi_0377 at 360.247 kb on - strand, within Dshi_0377 at 360.398 kb on + strand, within Dshi_0377 at 360.452 kb on - strand at 360.535 kb on + strand at 360.632 kb on - strand at 360.839 kb on + strand, within Dshi_0378 at 360.910 kb on - strand at 360.910 kb on - strand at 360.947 kb on + strand at 360.952 kb on + strand at 360.995 kb on + strand at 361.003 kb on - strand at 361.043 kb on + strand at 361.048 kb on - strand at 361.093 kb on - strand at 361.109 kb on + strand at 361.150 kb on + strand at 361.152 kb on - strand at 361.155 kb on + strand at 361.262 kb on - strand, within Dshi_0379 at 361.307 kb on + strand, within Dshi_0379 at 361.310 kb on - strand, within Dshi_0379 at 361.322 kb on + strand, within Dshi_0379 at 361.383 kb on + strand, within Dshi_0379 at 361.415 kb on - strand, within Dshi_0379 at 361.539 kb on - strand, within Dshi_0379 at 361.547 kb on + strand, within Dshi_0379 at 361.555 kb on - strand, within Dshi_0379 at 361.753 kb on + strand, within Dshi_0379 at 361.761 kb on - strand, within Dshi_0379 at 362.000 kb on - strand, within Dshi_0379 at 362.068 kb on - strand at 362.142 kb on + strand at 362.264 kb on - strand at 362.280 kb on + strand at 362.286 kb on + strand at 362.371 kb on + strand, within Dshi_0380 at 362.413 kb on + strand, within Dshi_0380 at 362.439 kb on - strand, within Dshi_0380 at 362.478 kb on + strand, within Dshi_0380 at 362.500 kb on - strand, within Dshi_0380 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 360,102 + +0.8 360,108 - -1.3 360,130 - +0.7 360,198 + Dshi_0377 0.24 -0.5 360,247 - Dshi_0377 0.40 +0.3 360,398 + Dshi_0377 0.89 +1.8 360,452 - +0.2 360,535 + -0.4 360,632 - +1.2 360,839 + Dshi_0378 0.64 +0.1 360,910 - +0.4 360,910 - +0.6 360,947 + +0.2 360,952 + +1.4 360,995 + +0.7 361,003 - -0.4 361,043 + +0.0 361,048 - +0.2 361,093 - -0.4 361,109 + +0.1 361,150 + +0.8 361,152 - +1.4 361,155 + +0.4 361,262 - Dshi_0379 0.19 -1.3 361,307 + Dshi_0379 0.23 -0.6 361,310 - Dshi_0379 0.23 +1.2 361,322 + Dshi_0379 0.24 +0.3 361,383 + Dshi_0379 0.30 +1.0 361,415 - Dshi_0379 0.33 +2.5 361,539 - Dshi_0379 0.44 +1.1 361,547 + Dshi_0379 0.45 +0.5 361,555 - Dshi_0379 0.46 +0.8 361,753 + Dshi_0379 0.64 +0.9 361,761 - Dshi_0379 0.65 +2.1 362,000 - Dshi_0379 0.87 +0.1 362,068 - -0.2 362,142 + +2.4 362,264 - -0.3 362,280 + -0.7 362,286 + +0.7 362,371 + Dshi_0380 0.14 -0.1 362,413 + Dshi_0380 0.18 +0.4 362,439 - Dshi_0380 0.20 +0.7 362,478 + Dshi_0380 0.23 +1.4 362,500 - Dshi_0380 0.24 -1.0 362,578 + Dshi_0380 0.30 +0.8 362,586 - Dshi_0380 0.31 +0.1 362,590 + Dshi_0380 0.31 +1.2 362,620 - Dshi_0380 0.34 +0.6 362,651 - Dshi_0380 0.36 -0.5 362,670 + Dshi_0380 0.38 +0.2 362,879 - Dshi_0380 0.54 -0.1 362,986 + Dshi_0380 0.62 +0.3 363,093 + Dshi_0380 0.71 -0.4 363,096 - Dshi_0380 0.71 +1.4
Or see this region's nucleotide sequence